PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G234300.1

Common Name

B456_002G234300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 273aa MW: 30499.2 Da PI: 7.0008

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G234300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.5	7.6e-11	14	100	13	90
TT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 13 sgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++rl +p ++++ +g+++e + +++de+g +W++ +++rk++++ vl + W +Fv++++L+egD v+++ ++++++ Gorai.002G234300.1 14 NRRLAVPMEYFNMEhfpkpgaslEGNPRE--DFVVKDEKGCVWNLSCSIRKQPNHpkPVLINEWIHFVQSKKLREGDKVIIYGEQDETG 100 56677777775333478888877788777..69**************9999999999999******************8777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.6E-16	3	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.97E-11	3	103	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.77E-13	3	93	No hit	No description
Pfam	PF02362	1.6E-8	14	102	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MIILEKRLSK TDINRRLAVP MEYFNMEHFP KPGASLEGNP REDFVVKDEK GCVWNLSCSI 60 RKQPNHPKPV LINEWIHFVQ SKKLREGDKV IIYGEQDETG LMQLRIKAEK CTGSYEDPCF 120 PFMNQNPDRN KGLSSHSSSS ESTATFQPSE TEDHSAEYHL ADVLNHELGR ITATTTPSIT 180 KEHIPTNHST SQDIARHKTK GPRLSPSVEL TLKPATTEGM TAGTSSSIDK NLAPTFHSHS 240 QDIGSYNTET PNLSLNLGLT LKPTYMQDTT HK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D2NS15	0.0	A0A0D2NS15_GOSRA; Uncharacterized protein
STRING	Gorai.002G234300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22080	3	4

Link Out ? help Back to Top
Phytozome	Gorai.002G234300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]