PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G230800.2 | ||||||||
Common Name | B456_002G230800, LOC105786246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 313aa MW: 33778.6 Da PI: 7.0308 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.6 | 1.8e-30 | 99 | 152 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Gorai.002G230800.2 99 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 152 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.059 | 96 | 155 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.05E-20 | 96 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-30 | 98 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-24 | 100 | 152 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 102 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MREEDSNWFS RWEEELPSPD ELMPLSQSLI TPDLAMAFDI RNPNHHHAQQ QQSSVQPAPP 60 PPSAAVQPSS QPTLAEFAAD SGDLGSGAAG DEPARTLKRP RLVWTPQLHK RFVDAVAHLG 120 IKNAVPKTIM QLMSVDGLTR ENVASHLQKY RLYLKRMQGL SGGSGGGANG GSGGAGLGAS 180 ADPATDHLFA SSPVPPHFLH PGRGNSEHFL PFVPVPALQH HHHHQQQQIV AAAVGHPHLQ 240 SQYHRPQMGH YGSSPNSQFE HPFLGRQTQQ PMHRIGGTPM HNQAPSSYVE DLESANGNGG 300 RKVLTLFPTG DD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 7e-32 | 99 | 155 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243127 | 0.0 | AC243127.1 Gossypium raimondii clone GR__Ba0222F01-hob, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468058.1 | 0.0 | PREDICTED: transcription factor PCL1 | ||||
Refseq | XP_012468059.1 | 0.0 | PREDICTED: transcription factor PCL1 | ||||
Refseq | XP_012468060.1 | 0.0 | PREDICTED: transcription factor PCL1 | ||||
Refseq | XP_016707635.1 | 0.0 | PREDICTED: transcription factor PCL1 | ||||
Refseq | XP_016707636.1 | 0.0 | PREDICTED: transcription factor PCL1 | ||||
Refseq | XP_016707637.1 | 0.0 | PREDICTED: transcription factor PCL1 | ||||
Refseq | XP_017623383.1 | 0.0 | PREDICTED: transcription factor PCL1 | ||||
Refseq | XP_017623384.1 | 0.0 | PREDICTED: transcription factor PCL1 | ||||
Swissprot | O22210 | 9e-68 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A0B0NS74 | 0.0 | A0A0B0NS74_GOSAR; Two-component response regulator ARR1-like protein | ||||
TrEMBL | A0A0D2QHN7 | 0.0 | A0A0D2QHN7_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8KZ05 | 0.0 | A0A1U8KZ05_GOSHI; transcription factor PCL1 | ||||
STRING | Gorai.002G230800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 4e-88 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G230800.2 |
Entrez Gene | 105786246 |
Publications ? help Back to Top | |||
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