PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G229100.1

Common Name

B456_002G229100, LOC105786228

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 361aa MW: 39925.7 Da PI: 6.4343

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G229100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	203	250	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Gorai.002G229100.1 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 250 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-15	197	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.21E-8	197	254	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-14	199	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.519	199	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-6	203	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	205	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MESNAGTTET RSNVTVPDGG EVAAFESLQF TDEIHRLISA PATDNASSFT ALLELPATQV 60 VELLHSPESV KLIVASAPNV EDFKGSFHFP SNTGLIQKDA RFSVFSGEGN NKNEKSNSPE 120 MTSKNSSANL EKAVKSEPAE TASSLPLVSD PTVENRNIKR KDREKKVKGS TKKSKTATNE 180 RLEDAEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD 240 EIINHVQSLQ RQVEFLSMRL ATVNPRIDFN LDSLFTPESG STMDGGNFPS LVTPLMWPDV 300 QVNGYRQQFQ HQWHFDTLKQ PIWGREEVCN NYVTLENSLL SYDSSANSAT LHANQLKMEL 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MESNAGTTET RSNVTVPDGG EVAAFESLQF TDEIHRLISA PATDNASSFT ALLELPATQV  60
VELLHSPESV KLIVASAPNV EDFKGSFHFP SNTGLIQKDA RFSVFSGEGN NKNEKSNSPE  120
MTSKNSSANL EKAVKSEPAE TASSLPLVSD PTVENRNIKR KDREKKVKGS TKKSKTATNE  180
RLEDAEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD  240
EIINHVQSLQ RQVEFLSMRL ATVNPRIDFN LDSLFTPESG STMDGGNFPS LVTPLMWPDV  300
QVNGYRQQFQ HQWHFDTLKQ PIWGREEVCN NYVTLENSLL SYDSSANSAT LHANQLKMEL  360
*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468025.1	0.0	PREDICTED: transcription factor bHLH48-like isoform X2
Swissprot	Q3EAI1	1e-94	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A0D2QHH6	0.0	A0A0D2QHH6_GOSRA; Uncharacterized protein
STRING	Gorai.002G229100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-106	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G229100.1
Entrez Gene	105786228

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]