PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G225400.1

Common Name

B456_002G225400, LOC105786189

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 384aa MW: 42793.8 Da PI: 7.7985

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G225400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.4	1.2e-31	212	266	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fv++v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Gorai.002G225400.1 212 KTRIRWTQDLHDKFVDCVKRLGGAEKATPKAILKLMDTEGLTIFHVKSHLQKYRI 266 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.441	209	269	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	210	266	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-28	211	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-24	212	267	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-8	216	265	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-21	294	340	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MNTQKLDYQE NVEQNLGFSR DCNFEYVGFQ QPWNMATPMV DGTVSHHPKS SSSSTILVGF 60 QTPGAAFYAT ERCMGFPQYG SSSQGAATSF CSQYNKLCNS QLPSFHASGD NFSIQSLMKS 120 QIFCNQYEKS SDKSCTTTQD PSHDLSNLLG TNAATLPNHF SVPFRGNQDQ GAYCNSHGSS 180 PAKLSFFLQE KQSSPRSFSV SPSSTGTVLT SKTRIRWTQD LHDKFVDCVK RLGGAEKATP 240 KAILKLMDTE GLTIFHVKSH LQKYRIAKYM PDSAQGKSEK RNDLTQIDVK TGLHLTEALQ 300 LQLDVQRRLH EQLEIQRNLQ LRIEEQGRQL KMMIDQQQKT SESLLKNQDF NINPFDPSIS 360 FQDVFETSIA ESSGTGNISS KIS*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MNTQKLDYQE NVEQNLGFSR DCNFEYVGFQ QPWNMATPMV DGTVSHHPKS SSSSTILVGF  60
QTPGAAFYAT ERCMGFPQYG SSSQGAATSF CSQYNKLCNS QLPSFHASGD NFSIQSLMKS  120
QIFCNQYEKS SDKSCTTTQD PSHDLSNLLG TNAATLPNHF SVPFRGNQDQ GAYCNSHGSS  180
PAKLSFFLQE KQSSPRSFSV SPSSTGTVLT SKTRIRWTQD LHDKFVDCVK RLGGAEKATP  240
KAILKLMDTE GLTIFHVKSH LQKYRIAKYM PDSAQGKSEK RNDLTQIDVK TGLHLTEALQ  300
LQLDVQRRLH EQLEIQRNLQ LRIEEQGRQL KMMIDQQQKT SESLLKNQDF NINPFDPSIS  360
FQDVFETSIA ESSGTGNISS KIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	212	269	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	212	269	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-22	212	269	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	212	269	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	212	269	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	212	269	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	212	269	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	212	269	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	212	269	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	212	269	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	212	269	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	212	269	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467979.1	0.0	PREDICTED: probable transcription factor KAN4
Swissprot	Q0WVU3	5e-78	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A0D2QAI9	0.0	A0A0D2QAI9_GOSRA; Uncharacterized protein
STRING	Gorai.002G225400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	3e-75	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G225400.1
Entrez Gene	105786189

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]