PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.002G224900.2 | ||||||||
Common Name | B456_002G224900, LOC105786184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 226aa MW: 23388.6 Da PI: 9.1463 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.6 | 2.1e-08 | 30 | 55 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f+ CkyGd+C+FaHg+ Gorai.002G224900.2 30 KTRLCNKFSGPEGCKYGDKCHFAHGE 55 89*******999************96 PP | |||||||
2 | zf-CCCH | 38.7 | 1.7e-12 | 192 | 216 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G+rC+FaHg Gorai.002G224900.2 192 YKTKLCDNFAK-GSCTFGERCHFAHG 216 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.61 | 28 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-13 | 28 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-4 | 28 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-8 | 28 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.94E-15 | 92 | 168 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.1E-12 | 97 | 167 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.655 | 98 | 162 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 7.8E-17 | 98 | 167 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 4.1E-12 | 100 | 164 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.71E-15 | 100 | 162 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-16 | 187 | 222 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-9 | 190 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.558 | 191 | 218 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-8 | 191 | 217 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-10 | 192 | 216 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MMNLAPAVPP ASRNVTATAA VPHGSGSQVK TRLCNKFSGP EGCKYGDKCH FAHGEWELGK 60 PIAPSQDDPR SMAPLPGRMG SRMEPPPPSG PAATFGASAT AKISVDASLA GAIIGKGGVH 120 SKQICRQTGA KLSIREHESD PSLRNIELEG SFEQIKEASA MVRELISSLG PVPGPAKTPG 180 AHGGQGHPGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL RKSVV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016707568.1 | 1e-164 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q69XQ3 | 2e-78 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A0D2NRH2 | 1e-163 | A0A0D2NRH2_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8L2J0 | 1e-163 | A0A1U8L2J0_GOSHI; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | Gorai.002G224900.1 | 1e-163 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-69 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.002G224900.2 |
Entrez Gene | 105786184 |
Publications ? help Back to Top | |||
---|---|---|---|
|