PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G223900.1
Common NameB456_002G223900, LOC105787340
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32131.2 Da    PI: 9.1232
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G223900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-18159213256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Gorai.002G223900.1 159 RKKLRLSKEQSAFLEESFKEHSNLNPKQKLALANQLNLRPRQVEVWFQNRRARTK 213
                         788899***********************************************98 PP
2HD-ZIP_I/II128.52.8e-41159248191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Gorai.002G223900.1 159 RKKLRLSKEQSAFLEESFKEHSNLNPKQKLALANQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKEVQELR-AL 248
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046188.6E-526119IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.6E-17145209IPR009057Homeodomain-like
PROSITE profilePS5007117.038155215IPR001356Homeobox domain
SuperFamilySSF466893.81E-18156224IPR009057Homeodomain-like
SMARTSM003896.3E-16157219IPR001356Homeobox domain
CDDcd000861.07E-15159216No hitNo description
PfamPF000461.8E-15159213IPR001356Homeobox domain
PROSITE patternPS000270190213IPR017970Homeobox, conserved site
SMARTSM003408.3E-26215258IPR003106Leucine zipper, homeobox-associated
PfamPF021838.7E-12215249IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MELGLSLDGS SKPFSFLEKT PKLSSNDHLG FCMGLGRSQE KRDSLEAERR GNGGDLKRVS  60
SDPHLQLHLR LPWLFDNLHE TGLSKGRGRG LDVNRLPMVA LAGEATVAHS SPNSAVSSFQ  120
MDFWFRNGNS RGNRGMDSET ERVSSRASDD DEDDNGSSRK KLRLSKEQSA FLEESFKEHS  180
NLNPKQKLAL ANQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET LTEENRRLHK  240
EVQELRALKT CQPFYMQLPA TTLTMCPSCK RVTTTSATDA KIGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163SRKKLRL
2207215RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469156.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466654e-97HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0D2QAH50.0A0A0D2QAH5_GOSRA; Uncharacterized protein
STRINGGorai.002G223900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-99homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]