PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G218600.1
Common NameB456_002G218600, LOC105786121
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 305aa    MW: 34500.8 Da    PI: 7.0513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G218600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.4e-182572148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd ll ++++++G g+W+  a++ g++Rt+k+c++rw++yl
  Gorai.002G218600.1 25 RGPWTLEEDTLLTHYIARHGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 72
                        89********************************************97 PP
2Myb_DNA-binding52.61e-1678121146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Gorai.002G218600.1  78 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6752072IPR017930Myb domain
SuperFamilySSF466895.24E-3123119IPR009057Homeodomain-like
SMARTSM007175.8E-152474IPR001005SANT/Myb domain
PfamPF002491.0E-152572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-232679IPR009057Homeodomain-like
CDDcd001671.20E-112772No hitNo description
PROSITE patternPS0017504049IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.75173127IPR017930Myb domain
SMARTSM007172.7E-1577125IPR001005SANT/Myb domain
PfamPF002491.0E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2380126IPR009057Homeodomain-like
CDDcd001679.50E-1282121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRAAMPPINT KNMSTPLEEE SELRRGPWTL EEDTLLTHYI ARHGEGRWNM LAKCAGLKRT  60
GKSCRLRWLN YLKPDIKRGN LTPQEQLLIL ELHSKWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQKQARQL NIESNSQRFL DAVRCFWMPR LVQKVEQASP SSSSSSSSSY LKEMCTQSSV  180
PSQLSSCCTV PSFPTVSPLA NKTTDISNSS SVTTQNICPT DSINNISDQT EIPQHLTGSN  240
VYGHTTLDQC YNIDSNDYGM EGISFASMSG VGFYEGTPSE GNWMCNEMSD DLWNMDDIWQ  300
LRSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-252212724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430920.0AC243092.1 Gossypioides kirkii clone GKH058K14-jmr, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467885.10.0PREDICTED: myb-related protein 305-like
SwissprotQ9C9G74e-90MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0D2RAK10.0A0A0D2RAK1_GOSRA; Uncharacterized protein
STRINGGorai.002G218600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-90myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]