PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G217800.1

Common Name

B456_002G217800, LOC105786111

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 222aa MW: 24442.2 Da PI: 9.0973

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G217800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.7	1e-29	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+l++a pe+ r++++ sl+yeA+ r+ +PvyG+vg++++ ++ Gorai.002G217800.1 4 SCNGCRVLRKGCSQNCIIRPCLqwiksPDSQANATLFLAKFYGRAGLLNLIEAGPENLRPAIFMSLLYEACGRVVNPVYGSVGMLWSRNWV 94 6**************************************************************************************** PP DUF260 87 leqlkaelallkee 100 +q++++++l +++ Gorai.002G217800.1 95 ECQAAVDAVLKGSQ 108 ***999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.851	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-23	4	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSQNCI IRPCLQWIKS PDSQANATLF LAKFYGRAGL LNLIEAGPEN 60 LRPAIFMSLL YEACGRVVNP VYGSVGMLWS RNWVECQAAV DAVLKGSQIT ETSSSESLAQ 120 QSISPLKTYD IRHVFKDPNT IDIDKVKSRT SFKRSATKSK RHVDSKEDAS MFSVETEEGS 180 LATQTKKGPL LKLGNQTEEI ADIRLELTLG LAPATMQLPR L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX585561	2e-77	JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467861.1	1e-165	PREDICTED: LOB domain-containing protein 42-like isoform X4
Swissprot	Q9CA30	8e-77	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A0D2QGX3	1e-164	A0A0D2QGX3_GOSRA; Uncharacterized protein
STRING	Gorai.002G217800.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8463	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	7e-76	LOB domain-containing protein 42

Link Out ? help Back to Top
Phytozome	Gorai.002G217800.1
Entrez Gene	105786111

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]