PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G215500.1 | ||||||||
Common Name | B456_002G215500, LOC105786091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 132aa MW: 15248.6 Da PI: 10.1742 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.3 | 3.3e-14 | 15 | 96 | 13 | 88 |
TT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 13 sgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 ++r+++p k + ++ +g+ e ++ ++de g +W++++ ++k ++ vltkGW+eFv ++L D v F++d++ Gorai.002G215500.1 15 QKRMTIPSKSL-NCfpalSGN-EHMVDFDVRDECGHVWKFRIYTrksNNKYRKPVLTKGWREFVCRKELSIDDKVEFYMDKQqA 96 4689******9.455998555.46689***************444445555559************************885433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.051 | 3 | 110 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-16 | 4 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.59E-14 | 4 | 106 | No hit | No description |
SuperFamily | SSF101936 | 2.16E-13 | 6 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.8E-11 | 15 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MATIVSKRLR KTDIQKRMTI PSKSLNCFPA LSGNEHMVDF DVRDECGHVW KFRIYTRKSN 60 NKYRKPVLTK GWREFVCRKE LSIDDKVEFY MDKQQADGSA EYRVTVQKAV KVFGAIFAHK 120 PFPGEVSNDI V* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467821.1 | 3e-95 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A0D2ME76 | 7e-94 | A0A0D2ME76_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G215500.1 | 1e-94 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16920 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 3e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G215500.1 |
Entrez Gene | 105786091 |
Publications ? help Back to Top | |||
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