PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G215000.3 | ||||||||
Common Name | B456_002G215000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 549aa MW: 57999.7 Da PI: 7.3667 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.6 | 7.5e-41 | 170 | 275 | 3 | 114 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ Gorai.002G215000.3 170 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAP---- 256 5699****************************************************************9997777777777744444.... PP TCP 93 saakskksqksaasalnlakes 114 +sk++++s + al+la ++ Gorai.002G215000.3 257 ---PSKSAPHSFHGALALASHH 275 ...3333333333333333322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.0E-39 | 174 | 274 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.496 | 175 | 229 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MELTDLQSNK QTKNNSSSSN NNNNNSAEPH HQSLQQHHLQ HQKQSASPQL VVPFDGTRSS 60 GPSSGNPFNM GSISHLHPHH PFHHLLLHPA SSTTTTTTTP PLPSSSTSSS SSSSASTTTT 120 NPPQLVDASL AIATRSTSLN IDSKNQTDLP ISSTTTPAST TTTTTTANPP VKRSTKDRHT 180 KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS 240 TLNISLRSSG STLSAPPSKS APHSFHGALA LASHHHHHHP YEEGFAHSAL LGFQQQHLLT 300 ADQIAEALPG GGGGDGGNLS ENYMRKRFRE DLFKDDDQQQ GESGSGGGDG SPIKAFKSGL 360 TQLSKPQQDA GSSALPRPSN ILPGTAMWAV APAPSSGAGS TFWMLPMSAG AGGPSVAPSA 420 ATGAGPSDHP QMWPFGTANQ ASGNTLQAPL HFLPRFNLPG NVEFQGGRAS PLQLGSMLMQ 480 QQQQQQQPHH HLGLGMSDSN LGMLAALNAY SRGGSNVNSD QNNPLEHHHQ QHQPQDMEHQ 540 VCDHQLIT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527491 | 0.0 | HQ527491.1 Gossypium herbaceum clone NBRI_C_7085 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467806.1 | 0.0 | PREDICTED: transcription factor TCP8 | ||||
Swissprot | Q9C518 | 3e-88 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | A0A0D2ME73 | 0.0 | A0A0D2ME73_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G215000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 7e-60 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G215000.3 |
Publications ? help Back to Top | |||
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