PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.002G208900.1 | ||||||||
Common Name | B456_002G208900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 222aa MW: 24683.7 Da PI: 7.9367 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.1 | 1.5e-15 | 7 | 39 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C +Cg +TplWR+gp ++ LCnaCG +yr+ Gorai.002G208900.1 7 CFHCGIDNTPLWRNGPPEKPVLCNACGSRYRLG 39 ****************88888**********86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.9E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.76E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 1.50E-14 | 6 | 60 | No hit | No description |
PROSITE profile | PS50114 | 11.2 | 7 | 57 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.6E-13 | 7 | 39 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.3E-13 | 7 | 39 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MKKQGPCFHC GIDNTPLWRN GPPEKPVLCN ACGSRYRLGK PLENYIPKST LQIIQKKKRK 60 AVPKSIVTNN GNASYSSSAM GDYASSESST AHNLNFCSIK QENLDDDFHP VEDLGSSWRN 120 HSRKRSAVVY NSLTTIQKLE RDLQKILRHE PHLFNGVESQ DDVLIYNVNI NNLQIPSKEI 180 GLGTILLNDF PVSSPPSSHH QDEQEIEVSP PNHAPTAPSY P* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467721.1 | 1e-164 | PREDICTED: GATA transcription factor 26-like | ||||
TrEMBL | A0A0D2Q9W6 | 1e-163 | A0A0D2Q9W6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G208900.1 | 1e-164 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18902 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17570.1 | 2e-25 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.002G208900.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|