PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G207000.1

Common Name

B456_002G207000, LOC105786001

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 288aa MW: 31304.3 Da PI: 9.5597

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G207000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.5	1.6e-14	206	260	4	58
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+e +L e el+k k Gorai.002G207000.1 206 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEEKARLLREEAELNKARFK 260 689**************************************99888888887654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-13	201	263	No hit	No description
SMART	SM00338	3.3E-12	203	267	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.944	205	256	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-11	205	264	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.33E-21	207	257	No hit	No description
SuperFamily	SSF57959	6.0E-10	208	255	No hit	No description
PROSITE pattern	PS00036	0	210	225	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MASSKVITTT SQTNPDLPRQ PSLCPSLSTL LADLQNQQNN QNQSQNGLGS MNMDDLLKNI 60 CSSPPPPPPT SDSHPQFAGV SISCEGSFSL PKDVANKSVD EVWKDIVVGG DDKRQGNPPV 120 GMTLEDFLTK AGAVREEDVR GVVNQVGVGA GVYPVDPAVI NGGGNHFSAF GNSGGVDHQR 180 LVAVAGGGAR GKRRAVEAPP LDKATQQKQR RMIKNRESAA RSRERKQAYT VELESLVTQL 240 EEEKARLLRE EAELNKARFK QLMENLVPVV EKRRPPRVLR RVHSMQW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1439	0.0	flower\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48800990	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467680.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	A0A0D2R9Z9	0.0	A0A0D2R9Z9_GOSRA; Uncharacterized protein
STRING	Gorai.002G207000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16538	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	8e-20	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G207000.1
Entrez Gene	105786001

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]