PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G206700.5
Common NameB456_002G206700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 685aa    MW: 76325.1 Da    PI: 5.7215
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G206700.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK89.42.9e-28612661251
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                         ek+isle+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik+
  Gorai.002G206700.5 612 EKTISLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKK 661
                         799*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.448601682IPR003035RWP-RK domain
PfamPF020423.3E-24614661IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MEGDGAVHSD FSPNSTFVDA AMDLDLMDEL LFEGCWLETN DDFNFMQPAP STSNDLNQSI  60
TVPSNANLHQ MHQGETERSV SPPCDGSAVG NASSLLQPGT FIVQGTELGS RWWIGPSAES  120
GSSLSVKERL MQAIGYLKES TKDRDLLIQI WVPVNREGKH VLTTEGQPYS LNTNCKSLEI  180
FRDVSKSYNF PAEEDTKESV GLPGRVFLEK LPEWTPDVRF FRSEEYPRIS FAEKYNVGGS  240
LALPVFERAN GTCLGVVEIV TTIQKSNYRP ELEHVCKALE AVDLRSSPNF TPPNVEACNE  300
LYQAALPEIA EVLRSVCKTY KLPLALTWAP CLNQGKSGCR HSYENFYHCV STVDTACFIA  360
DEEFSEFLEA CSEHHMFRGQ GVVGRAFTTN KQCFATDITA FSKTNYPLSH HARMFGLRGA  420
VAIPLQSIFT GLVEFVLELF LPKDCHDSEA QKQMLNSLSG FMQQACQSLH VVVDKMLEEE  480
VILPVKEVVV ASDRRSDKEE TQFTVSSAKE NSPEESSWIA HMMEAQQKGK GVSVSWEYQK  540
EEPKEEFKVT THWEDTQLEL HGKEVLSDFQ QLHQNDESKA SVEGGGGDSS SSGGRGVLPS  600
KRAGEKRRTK MEKTISLEVL RQYFAGSLKD AAKSIGVCPT TLKRICRHHG ITRWPSRKIK  660
KGRSTQASRN LAHQTFLVMT LLRL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467670.10.0PREDICTED: protein NLP2-like
RefseqXP_012467671.10.0PREDICTED: protein NLP2-like
RefseqXP_012467672.10.0PREDICTED: protein NLP2-like
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLA0A0D2R9X40.0A0A0D2R9X4_GOSRA; Uncharacterized protein
STRINGGorai.002G206700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]