PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G206700.4

Common Name

B456_002G206700, LOC105785997

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 933aa MW: 102896 Da PI: 5.7632

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G206700.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.5	1.4e-28	612	662	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ Gorai.002G206700.4 612 EKTISLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 662 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.143	601	682	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-24	614	662	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-23	828	920	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-22	832	915	No hit	No description
SMART	SM00666	2.1E-25	834	917	IPR000270	PB1 domain
PROSITE profile	PS51745	24.974	834	917	IPR000270	PB1 domain
CDD	cd06407	1.82E-43	835	916	No hit	No description
Pfam	PF00564	2.1E-16	835	916	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MEGDGAVHSD FSPNSTFVDA AMDLDLMDEL LFEGCWLETN DDFNFMQPAP STSNDLNQSI 60 TVPSNANLHQ MHQGETERSV SPPCDGSAVG NASSLLQPGT FIVQGTELGS RWWIGPSAES 120 GSSLSVKERL MQAIGYLKES TKDRDLLIQI WVPVNREGKH VLTTEGQPYS LNTNCKSLEI 180 FRDVSKSYNF PAEEDTKESV GLPGRVFLEK LPEWTPDVRF FRSEEYPRIS FAEKYNVGGS 240 LALPVFERAN GTCLGVVEIV TTIQKSNYRP ELEHVCKALE AVDLRSSPNF TPPNVEACNE 300 LYQAALPEIA EVLRSVCKTY KLPLALTWAP CLNQGKSGCR HSYENFYHCV STVDTACFIA 360 DEEFSEFLEA CSEHHMFRGQ GVVGRAFTTN KQCFATDITA FSKTNYPLSH HARMFGLRGA 420 VAIPLQSIFT GLVEFVLELF LPKDCHDSEA QKQMLNSLSG FMQQACQSLH VVVDKMLEEE 480 VILPVKEVVV ASDRRSDKEE TQFTVSSAKE NSPEESSWIA HMMEAQQKGK GVSVSWEYQK 540 EEPKEEFKVT THWEDTQLEL HGKEVLSDFQ QLHQNDESKA SVEGGGGDSS SSGGRGVLPS 600 KRAGEKRRTK MEKTISLEVL RQYFAGSLKD AAKSIGVCPT TLKRICRHHG ITRWPSRKIK 660 KVGHSLRKLQ LVIDSVQGAE GAIQIGSFYS SFPELSSPNL SGNDPSSSLK ISGHSKPSEP 720 QLENCMFNQG AAAPKSPSSS CSQSSGSSTC CSMGVKQHST SISALCSADG LMVEDPGGAL 780 KRARSDAELH SLNQEEPKLL ARSQSHKTLG ELPPLETQSP LPKTGGQNLR TGGAFRVKAT 840 FGEVKIRFSL QPSWGFRDVQ QEIAKRFNIE DVSRMCLKYL DDDNEWVLLT CDADLEECRD 900 IYKSFQSHTI KISLHQASHP NLGSSFGSSA PL*

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MEGDGAVHSD FSPNSTFVDA AMDLDLMDEL LFEGCWLETN DDFNFMQPAP STSNDLNQSI  60
TVPSNANLHQ MHQGETERSV SPPCDGSAVG NASSLLQPGT FIVQGTELGS RWWIGPSAES  120
GSSLSVKERL MQAIGYLKES TKDRDLLIQI WVPVNREGKH VLTTEGQPYS LNTNCKSLEI  180
FRDVSKSYNF PAEEDTKESV GLPGRVFLEK LPEWTPDVRF FRSEEYPRIS FAEKYNVGGS  240
LALPVFERAN GTCLGVVEIV TTIQKSNYRP ELEHVCKALE AVDLRSSPNF TPPNVEACNE  300
LYQAALPEIA EVLRSVCKTY KLPLALTWAP CLNQGKSGCR HSYENFYHCV STVDTACFIA  360
DEEFSEFLEA CSEHHMFRGQ GVVGRAFTTN KQCFATDITA FSKTNYPLSH HARMFGLRGA  420
VAIPLQSIFT GLVEFVLELF LPKDCHDSEA QKQMLNSLSG FMQQACQSLH VVVDKMLEEE  480
VILPVKEVVV ASDRRSDKEE TQFTVSSAKE NSPEESSWIA HMMEAQQKGK GVSVSWEYQK  540
EEPKEEFKVT THWEDTQLEL HGKEVLSDFQ QLHQNDESKA SVEGGGGDSS SSGGRGVLPS  600
KRAGEKRRTK MEKTISLEVL RQYFAGSLKD AAKSIGVCPT TLKRICRHHG ITRWPSRKIK  660
KVGHSLRKLQ LVIDSVQGAE GAIQIGSFYS SFPELSSPNL SGNDPSSSLK ISGHSKPSEP  720
QLENCMFNQG AAAPKSPSSS CSQSSGSSTC CSMGVKQHST SISALCSADG LMVEDPGGAL  780
KRARSDAELH SLNQEEPKLL ARSQSHKTLG ELPPLETQSP LPKTGGQNLR TGGAFRVKAT  840
FGEVKIRFSL QPSWGFRDVQ QEIAKRFNIE DVSRMCLKYL DDDNEWVLLT CDADLEECRD  900
IYKSFQSHTI KISLHQASHP NLGSSFGSSA PL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467670.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_012467671.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_012467672.1	0.0	PREDICTED: protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A0D2MDR4	0.0	A0A0D2MDR4_GOSRA; Uncharacterized protein
STRING	Gorai.002G206700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G206700.4
Entrez Gene	105785997

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]