PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G182700.7 | ||||||||
Common Name | B456_002G182700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 376aa MW: 41320 Da PI: 8.7829 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.8 | 4.3e-40 | 187 | 264 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+ dls+ak+yhr+h++Ce hsk+p+v+v+g+e+rfCqqCs+fh lsefDe+krsCrrrL++hn+rrrk+q+ Gorai.002G182700.7 187 RCQVEDCNFDLSSAKDYHRKHRICESHSKSPKVIVRGQERRFCQQCSKFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 264 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-32 | 182 | 249 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.111 | 185 | 262 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.06E-38 | 186 | 267 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.1E-31 | 188 | 261 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MSSISPMDWN AKTPLQWDWE NLMMLNATPA EIPRKLRPEE WDIDGEGGMN SGSFYSSGAA 60 GGSGGSGSDL GLASLSKSSK SASINSSSMG EVKMTKFTSE AFEAIPDDIS NQNEAFRAEL 120 AGTSPTLEAS VGSGEPLLSL KLGKQTYFED VSGGSNTKNL SYSSTSGQSP AQAKRSKPNC 180 QGIHVPRCQV EDCNFDLSSA KDYHRKHRIC ESHSKSPKVI VRGQERRFCQ QCSKFHGLSE 240 FDEKKRSCRR RLSDHNARRR KPQTEAFHFS GTRFSSSPND GKQQMSFIWN KVPFLHNARP 300 NEIFTWEGTF DSKSSQMKGY TPTKVGNVNG QPNLPGNQLL NSITMRCHDS NGFLPSKGKQ 360 SIDDILNQSL VCLSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-26 | 188 | 261 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 243 | 260 | KKRSCRRRLSDHNARRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.36 | 0.0 | flower|seedling| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48808801 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622310 | 0.0 | KJ622310.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467348.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_012467349.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_012467350.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_012467351.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_012467352.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_012467353.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X1 | ||||
Refseq | XP_012467354.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X1 | ||||
Swissprot | Q9S840 | 1e-83 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A0D2QF43 | 0.0 | A0A0D2QF43_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G182700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 3e-77 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G182700.7 |
Publications ? help Back to Top | |||
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