PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G182700.2
Common NameB456_002G182700, LOC105785749
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 470aa    MW: 51861.4 Da    PI: 7.9916
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G182700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.36.1e-40187264178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C+ dls+ak+yhr+h++Ce hsk+p+v+v+g+e+rfCqqCs+fh lsefDe+krsCrrrL++hn+rrrk+q+
  Gorai.002G182700.2 187 RCQVEDCNFDLSSAKDYHRKHRICESHSKSPKVIVRGQERRFCQQCSKFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 264
                         6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-32182249IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.111185262IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.02E-37186267IPR004333Transcription factor, SBP-box
PfamPF031105.8E-31188261IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MSSISPMDWN AKTPLQWDWE NLMMLNATPA EIPRKLRPEE WDIDGEGGMN SGSFYSSGAA  60
GGSGGSGSDL GLASLSKSSK SASINSSSMG EVKMTKFTSE AFEAIPDDIS NQNEAFRAEL  120
AGTSPTLEAS VGSGEPLLSL KLGKQTYFED VSGGSNTKNL SYSSTSGQSP AQAKRSKPNC  180
QGIHVPRCQV EDCNFDLSSA KDYHRKHRIC ESHSKSPKVI VRGQERRFCQ QCSKFHGLSE  240
FDEKKRSCRR RLSDHNARRR KPQTEAFHFS GTRFSSSPND GKQQMSFIWN KVPFLHNARP  300
NEIFTWEGTF DSKSSQMKGY TPTKVGNVNG QPNLPGNQLL NSITMRCHDS NGFLPSKGKQ  360
SVEESRVDSN MATTQDLHRA LSLLSNESWV SCEPKHGSIA YPVHVNPSTS MSQPAMNAIS  420
RGFPSALSEN WQMEQQTTES QVHNSDGDNH FQEFQLLKAP YYSGFYSNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-251882611184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243260KKRSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.360.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488088010.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223100.0KJ622310.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467355.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X2
TrEMBLA0A0D2Q8G40.0A0A0D2Q8G4_GOSRA; Uncharacterized protein
STRINGGorai.002G182700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-82squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]