PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G182700.1

Common Name

B456_002G182700, LOC105785749

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 478aa MW: 52760.4 Da PI: 7.5783

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G182700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.2	6.3e-40	187	264	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+ dls+ak+yhr+h++Ce hsk+p+v+v+g+e+rfCqqCs+fh lsefDe+krsCrrrL++hn+rrrk+q+ Gorai.002G182700.1 187 RCQVEDCNFDLSSAKDYHRKHRICESHSKSPKVIVRGQERRFCQQCSKFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 264 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-32	182	249	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.111	185	262	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.05E-37	186	267	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.0E-31	188	261	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MSSISPMDWN AKTPLQWDWE NLMMLNATPA EIPRKLRPEE WDIDGEGGMN SGSFYSSGAA 60 GGSGGSGSDL GLASLSKSSK SASINSSSMG EVKMTKFTSE AFEAIPDDIS NQNEAFRAEL 120 AGTSPTLEAS VGSGEPLLSL KLGKQTYFED VSGGSNTKNL SYSSTSGQSP AQAKRSKPNC 180 QGIHVPRCQV EDCNFDLSSA KDYHRKHRIC ESHSKSPKVI VRGQERRFCQ QCSKFHGLSE 240 FDEKKRSCRR RLSDHNARRR KPQTEAFHFS GTRFSSSPND GKQQMSFIWN KVPFLHNARP 300 NEIFTWEGTF DSKSSQMKGY TPTKVGNVNG QPNLPGNQLL NSITMRCHDS NGFLPSKGKQ 360 SIDDILNQSV EESRVDSNMA TTQDLHRALS LLSNESWVSC EPKHGSIAYP VHVNPSTSMS 420 QPAMNAISRG FPSALSENWQ MEQQTTESQV HNSDGDNHFQ EFQLLKAPYY SGFYSNQ*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MSSISPMDWN AKTPLQWDWE NLMMLNATPA EIPRKLRPEE WDIDGEGGMN SGSFYSSGAA  60
GGSGGSGSDL GLASLSKSSK SASINSSSMG EVKMTKFTSE AFEAIPDDIS NQNEAFRAEL  120
AGTSPTLEAS VGSGEPLLSL KLGKQTYFED VSGGSNTKNL SYSSTSGQSP AQAKRSKPNC  180
QGIHVPRCQV EDCNFDLSSA KDYHRKHRIC ESHSKSPKVI VRGQERRFCQ QCSKFHGLSE  240
FDEKKRSCRR RLSDHNARRR KPQTEAFHFS GTRFSSSPND GKQQMSFIWN KVPFLHNARP  300
NEIFTWEGTF DSKSSQMKGY TPTKVGNVNG QPNLPGNQLL NSITMRCHDS NGFLPSKGKQ  360
SIDDILNQSV EESRVDSNMA TTQDLHRALS LLSNESWVSC EPKHGSIAYP VHVNPSTSMS  420
QPAMNAISRG FPSALSENWQ MEQQTTESQV HNSDGDNHFQ EFQLLKAPYY SGFYSNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-26	188	261	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	260	KKRSCRRRLSDHNARRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.36	0.0	flower\|seedling\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48808801	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622310	0.0	KJ622310.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467348.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_012467349.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_012467350.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_012467351.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_012467352.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_012467353.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_012467354.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
TrEMBL	A0A0D2NPR2	0.0	A0A0D2NPR2_GOSRA; Uncharacterized protein
STRING	Gorai.002G182700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6562	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	3e-83	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Phytozome	Gorai.002G182700.1
Entrez Gene	105785749

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]