PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G181700.2

Common Name

B456_002G181700, LOC105785738

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 293aa MW: 32221.2 Da PI: 9.9272

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G181700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.1	1.9e-41	24	100	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCevhsk+p+v+++g+eqrfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+ Gorai.002G181700.2 24 CLVDGCTADLSQCRDYHRRHKVCEVHSKTPKVIIRGQEQRFCQQCSRFHCLAEFDEGKRSCRKRLDGHNRRRRKPQP 100 **************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.9E-34	17	85	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.573	21	98	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.81E-39	22	102	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-30	24	97	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MEPSSSAPFK RARPPGNRNQ VPSCLVDGCT ADLSQCRDYH RRHKVCEVHS KTPKVIIRGQ 60 EQRFCQQCSR FHCLAEFDEG KRSCRKRLDG HNRRRRKPQP QPQPQPHSLS VNPGRCLSNL 120 QGSRHLPSSS PQIFATTAIT SSWLGTAKME PDIGSESSRN GFFRGSFPHS YKREEQLSLL 180 QTNHSSLHGV SVYQLPLLSN GVGSSQKMFS NAIDSGRALS LLSSQPAETR EIGLKPMVLS 240 GPTSSLIPNM QYNGVAMEGE HVLATDGNGN TNIYGQEMFG SANGTLQRLS FS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	24	97	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	97	KRSCRKRLDGHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622316	0.0	KJ622316.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467335.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_012467337.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBL	A0A0D2R897	0.0	A0A0D2R897_GOSRA; Uncharacterized protein
STRING	Gorai.002G181700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-40	SBP family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G181700.2
Entrez Gene	105785738

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]