PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G169000.1

Common Name

B456_002G169000, LOC105785591

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 304aa MW: 34880 Da PI: 9.1581

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G169000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.5	9.8e-20	47	132	2	82
trihelix 2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 Wt qe+l+Li+a+r ++er + +k + +W+++ ++++++g+ rs++qC++kw+nl ++ykk+++ ++++ s+s+s++p++ Gorai.002G169000.1 47 WTIQETLTLITAKRLDDERRAKpstsspSKPGELRWKWIENYCWDHGCFRSQNQCNDKWDNLLRDYKKVRQYQSSH-SQSQSSHPFL 132 ************77777775333333468899***************************************9.5666678875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-4	39	111	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.387	39	109	IPR017877	Myb-like domain
Pfam	PF13837	6.1E-14	46	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MSNPLPPPPP PSTHHHQHQP LNIITPATTS ATTMTSAPNR EYRKGNWTIQ ETLTLITAKR 60 LDDERRAKPS TSSPSKPGEL RWKWIENYCW DHGCFRSQNQ CNDKWDNLLR DYKKVRQYQS 120 SHSQSQSSHP FLSYWSMERH QRKLHNLPTN MSPEVFEALN DVLQRKLNTQ QQPHLHQPSF 180 SQSPEQLPLK TDQNPPEVDA PVTVSEESDS SETESSENLD SKTKRKKVRK IGSSIMRSAS 240 VLAQTLKSCE ENKEKRHQQV MELEHRRLQI EETRNEVNRK GITDLVAAMT NLSGAIQSLI 300 ANH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467156.1	0.0	PREDICTED: uncharacterized protein LOC105785591
TrEMBL	A0A0D2NP59	0.0	A0A0D2NP59_GOSRA; Uncharacterized protein
STRING	Gorai.002G169000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-47	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G169000.1
Entrez Gene	105785591

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]