PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G163900.1

Common Name

B456_002G163900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 805aa MW: 92041.3 Da PI: 8.3769

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G163900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.5	6e-25	39	137	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fY++YAk++GFs+ +++s++s+ +g++++++fvC+++g++ e+ +++ r +r+ ++t+Cka ++vk+++dg+w v ++ Gorai.002G163900.1 39 SFYKQYAKSAGFSTIIKASRRSRISGKFIDAKFVCTRYGNDPESPLPafattipvkKKRGRLNRSWSKTDCKAGMHVKRRQDGRWIVCSFI 129 5*************************************999988899998888888************************* PP FAR1 83 leHnHela 90 +eHnH+ + Gorai.002G163900.1 130 KEHNHDTF 137 ***865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-23	39	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-24	254	339	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	520	556	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.7E-6	528	549	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.3E-6	531	558	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence Send to blast
MVDSSSDDRV RSSSVDAARF HKEYGLDGLE FDSKEEAFSF YKQYAKSAGF STIIKASRRS 60 RISGKFIDAK FVCTRYGNDP ESPLPAFATT IPVKKKRGRL NRSWSKTDCK AGMHVKRRQD 120 GRWIVCSFIK EHNHDTFPDQ GYYSRGHTPL ALGNSDVSAT AGRAKKMHLA TSTQSGGHKK 180 LDHHTAGDSN RLRSCQLLGL EEGDLQVLLD RFNHMQDENP NFFYAMDLNE EQRLRNVFWI 240 DAKGRLDYGY FDDVVFLDTT YIKNDFKLPV VPFIGVNHHL QFLLLGCALV ADQTKLTYVW 300 LMRAWLRAMG GNAPKVILTD HDKALKAAVV EVFPDSRHSC IVLGQHENFM AKFDECISKS 360 YMDEQFEKKW LELVDAFNLR NDLWFQSLYE DSKKWVPTYM RGVFLAGMST VQRSDSVSSH 420 FDKYLQRKTM LKEFLDQYKT ILREKPEEEA KADFETGHKP PGLKSPSLFE KQMAPLYTHA 480 IFKKFQVEVL GGIACHPMKE REEKGTMTFK VQDFEKNQEF IVVWNDTTSD ISCLCRGFEF 540 NGFPCRHMLI ILQLSGVQSI PSQLILKRWT KDAKHSQTTG KQSDVVETRM RRYYDLCQRA 600 FKLGDEGSLS RESYNIIFNA LEEALGKCKS VNYTIQNITG PMSVETQGPH HFEEENQNSS 660 TTKEVKRTKT TLREGYPETE ISNTGRCDSW QQLGLSNIRV PSLECSYESQ ESRHRMELHS 720 RTLNSYFGTQ QLMQGQLSST GRPHDACITQ QRINGMGQLP FRLQSISSCY DIQDGLQDMD 780 QPNAGSSQLL GMASKKLHSK HISK*

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence Send to blast

MVDSSSDDRV RSSSVDAARF HKEYGLDGLE FDSKEEAFSF YKQYAKSAGF STIIKASRRS  60
RISGKFIDAK FVCTRYGNDP ESPLPAFATT IPVKKKRGRL NRSWSKTDCK AGMHVKRRQD  120
GRWIVCSFIK EHNHDTFPDQ GYYSRGHTPL ALGNSDVSAT AGRAKKMHLA TSTQSGGHKK  180
LDHHTAGDSN RLRSCQLLGL EEGDLQVLLD RFNHMQDENP NFFYAMDLNE EQRLRNVFWI  240
DAKGRLDYGY FDDVVFLDTT YIKNDFKLPV VPFIGVNHHL QFLLLGCALV ADQTKLTYVW  300
LMRAWLRAMG GNAPKVILTD HDKALKAAVV EVFPDSRHSC IVLGQHENFM AKFDECISKS  360
YMDEQFEKKW LELVDAFNLR NDLWFQSLYE DSKKWVPTYM RGVFLAGMST VQRSDSVSSH  420
FDKYLQRKTM LKEFLDQYKT ILREKPEEEA KADFETGHKP PGLKSPSLFE KQMAPLYTHA  480
IFKKFQVEVL GGIACHPMKE REEKGTMTFK VQDFEKNQEF IVVWNDTTSD ISCLCRGFEF  540
NGFPCRHMLI ILQLSGVQSI PSQLILKRWT KDAKHSQTTG KQSDVVETRM RRYYDLCQRA  600
FKLGDEGSLS RESYNIIFNA LEEALGKCKS VNYTIQNITG PMSVETQGPH HFEEENQNSS  660
TTKEVKRTKT TLREGYPETE ISNTGRCDSW QQLGLSNIRV PSLECSYESQ ESRHRMELHS  720
RTLNSYFGTQ QLMQGQLSST GRPHDACITQ QRINGMGQLP FRLQSISSCY DIQDGLQDMD  780
QPNAGSSQLL GMASKKLHSK HISK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467098.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A0D2R7A0	0.0	A0A0D2R7A0_GOSRA; Uncharacterized protein
STRING	Gorai.002G163900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G163900.1

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]