PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G159600.1
Common NameB456_002G159600, LOC105785480
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 528aa    MW: 60006 Da    PI: 7.6447
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G159600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.32.7e-30112197187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+l+L+e+r+ ++ +++++++k+plW+evs++m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Gorai.002G159600.1 112 RWPRQETLTLLEIRSHLDPKFKEANQKGPLWDEVSRVMfEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 197
                         8*************************************99******************************98..55667*******85 PP
2trihelix56.29e-18392475282
            trihelix   2 WtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkryk..kikegekkrtsessstcpyf 82 
                         W++ ev  L+++r+ me+++++   + +  lWee+++km   gfers  +Ck+kw+ + + y   k+ke++kkr +e+s+ + y+
  Gorai.002G159600.1 392 WQEAEVSRLLQLRTAMETKFQQvgYSEEVVLWEEIAAKMGCLGFERSGLMCKDKWDTIGGAYTlmKTKESNKKR-KENSRGFDYY 475
                         *********************9434799**********************************833555556655.6666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.098109172IPR001005SANT/Myb domain
PROSITE profilePS500906.864111170IPR017877Myb-like domain
CDDcd122031.01E-20112177No hitNo description
PfamPF138371.4E-19112198No hitNo description
Gene3DG3DSA:1.10.10.601.4E-4383448IPR009057Homeodomain-like
PROSITE profilePS500906.423384450IPR017877Myb-like domain
SMARTSM007171.7388452IPR001005SANT/Myb domain
PfamPF138375.1E-12391475No hitNo description
CDDcd122033.97E-16392449No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MEMEDHRHHQ YAIPDLRQLL NGKPINFQAI PQDTELFSPG HHRNLPPSQQ PHHPFDVMQV  60
VGRHEFPSDS TGNTNGTPMA AVATVTSAST LSPSCGFDGE ATAFGGDGGN GRWPRQETLT  120
LLEIRSHLDP KFKEANQKGP LWDEVSRVMF EEHGYQRSGK KCREKFENLY KYYKKTKEGK  180
AGRQDGKHYR FFRQLEALYG DTSNNNGVLG QETPLIGNSF QFHGAQNSIN TQANQEIYHS  240
QKLCSDSLSL SSSSKFDTCS SDNNDLSTAK LKKKRGCRSW KAKIKEFIDS QIGKLMERQE  300
AWLVKLTKTL EEKEQERLLR EEQWRKEAAI RIDREHKFWA KERAWIEARD AALMEALQNL  360
AGKQLKAASS NGENHNENGN GTINHTVKAD GWQEAEVSRL LQLRTAMETK FQQVGYSEEV  420
VLWEEIAAKM GCLGFERSGL MCKDKWDTIG GAYTLMKTKE SNKKRKENSR GFDYYQPNET  480
IFTQGPETLR LQPNDGSSHA VSDSCFRFFM ADGDNNLWEN YGLKLSN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}.
UniprotTISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775462e-76JX577546.1 Gossypium hirsutum clone NBRI_GE9395 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467038.10.0PREDICTED: trihelix transcription factor PTL
SwissprotQ9LZS01e-135PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A0D2R6Z40.0A0A0D2R6Z4_GOSRA; Uncharacterized protein
STRINGGorai.002G159600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-112Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]