PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G159400.1
Common NameB456_002G159400, LOC105787267
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 185aa    MW: 19599.8 Da    PI: 4.8045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G159400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-182676155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        + ykGVr+++ +g+Wv+eIr+p+    +  r++lg+f tae+Aa a++ a+++l+g
  Gorai.002G159400.1 26 PVYKGVRRRS-SGKWVSEIREPR----KpNRIWLGTFPTAEMAAIAYDVAALALKG 76
                        68*****888.8*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-122676IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-212786IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-302786IPR001471AP2/ERF domain
PROSITE profilePS5103222.7482784IPR001471AP2/ERF domain
SMARTSM003803.8E-342790IPR001471AP2/ERF domain
CDDcd000183.06E-312886No hitNo description
PRINTSPR003673.9E-82839IPR001471AP2/ERF domain
PRINTSPR003673.9E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MHYSKPDKTS NASTSGGSSS ATGRHPVYKG VRRRSSGKWV SEIREPRKPN RIWLGTFPTA  60
EMAAIAYDVA ALALKGQDAE LNFPNSAASL PVPASTSPRD IQAAATSAAT ALGAANDALR  120
NNSIAPPEKP SMADDFVDED LIFDMPNVLS NMAEGMLLSP PRFDADQPPA NNGGDDDENL  180
WKFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-171786474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158143e-63JX615814.1 Gossypium hirsutum clone NBRI_GE60034 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469120.11e-131PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR03e-56ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0D2NNT51e-130A0A0D2NNT5_GOSRA; Uncharacterized protein
STRINGGorai.002G159400.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.15e-45ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]