PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G156700.1
Common NameB456_002G156700, LOC105785454
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 375aa    MW: 40327.7 Da    PI: 8.9896
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G156700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.22e-4280155176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +CqvegC++dl++ak y++rhkvC +hska++v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Gorai.002G156700.1  80 RCQVEGCKVDLTDAKAYYSRHKVCGMHSKAAKVIVAGLEQRFCQQCSRFHQLPEFDQRKRSCRRRLAGHNERRRKP 155
                         6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-3474142IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.16378155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-4079159IPR004333Transcription factor, SBP-box
PfamPF031105.6E-3281154IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEMGSGSLTD SGGSSSNSST ESLNGLKFGQ KIYFEDTSAG GTGGGTTMGT PPKSGIGSSS  60
SSGSGKKARG GVVQGGQPPR CQVEGCKVDL TDAKAYYSRH KVCGMHSKAA KVIVAGLEQR  120
FCQQCSRFHQ LPEFDQRKRS CRRRLAGHNE RRRKPPPGSL LSSRYSRLSS SIIESSRGGS  180
FIMDFTSHPR LSRRDVWPTS RSSEHVPGNQ YTGTGWLHPH PWQNNSENPP PNLYRQELPG  240
GTAVPSGGIP PGECFTGVVD SNCALSLLSN QPWGSRNQGL TLGLNDMINS ELCSMSQPAM  300
PHGAVTNSYS NASWGFKGNH SCSRSQEMLP QIPEPINSQL TGGLQLSHQS RGQYMEHEPS  360
NADDTSMQHI HQSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30811541184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136153RKRSCRRRLAGHNERRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223120.0KJ622312.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467002.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A0D2R6U20.0A0A0D2R6U2_GOSRA; Uncharacterized protein
STRINGGorai.002G156700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-51squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]