PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G152400.1
Common NameB456_002G152400, LOC105785408
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 685aa    MW: 74508.4 Da    PI: 6.3674
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G152400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07273293526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Gorai.002G152400.1 273 PCPDFRK-GACRRGDMCEYAHG 293
                         8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.0E-1810151IPR020683Ankyrin repeat-containing domain
CDDcd002044.99E-1515130No hitNo description
SuperFamilySSF484032.33E-1715135IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-1053126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.52957151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00925787IPR002110Ankyrin repeat
PRINTSPR014155.6E-55873IPR002110Ankyrin repeat
PROSITE profilePS5008812.44992127IPR002110Ankyrin repeat
SMARTSM002486.1E-592124IPR002110Ankyrin repeat
PRINTSPR014155.6E-5111125IPR002110Ankyrin repeat
SMARTSM003564.0E-6268294IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-5273293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582273295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4273295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4301331IPR000571Zinc finger, CCCH-type
SMARTSM0035665303326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MNHLTLVTDD TFASLLELAA NNDVEGFKRW IEHDPFSVDE VGLWYGRQKG SKQMVNEERT  60
PLMVASTYGS IDVIKLIISS SDADVNRVCG RDKSTALHCA ASGGADNVID VVKLLLAAGA  120
DVNMVDANGH PPVDVIVVPP KLRDVKLTLE KLLATESSCF DSRVAAVANS DSPPLSPSQE  180
NGSLFSGSDS PIKSRPSDAP ISSVSEKKEY PIDPSLPDIK NSIYSTDELR MYSFKVRPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPDFRKG ACRRGDMCEY AHGVFECWLH  300
PAQYRTRLCK DGTSCARRVC FFAHTADELR PLYVSTGSAV PSPRSSASGA TAMDFAAAMS  360
LLPGSPSSVS VMSPSPFTPP MSPSVNGMPH SNVGWPQPNV PALHLPGSNL QSSRLRSSLN  420
ARDIQAEDFN LLPDFDLQQH QLINELSSLT QPSMSSSSFN RSGRMKTLTP SNLDDLFSAE  480
SSSPRYSDQA LAAAVFSPTH KSAVLNQFQQ QQSMLSPINT NYSPKSIEHP LLQASLSGRM  540
SSRNVEPISP MSSRVSMLAQ WEKQQEFRSL SSRELGSGLA AIVGSPVNSW SKWGSSNGKP  600
DWAVNADGVG KHRRSSSFEH GNGDEPDLSW VQSLVKESPT EIKDKIAAPV SGEGSSRNSD  660
TVDNAMLGAW LEQMQLDQLV AQQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466944.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0D2R6I20.0A0A0D2R6I2_GOSRA; Uncharacterized protein
STRINGGorai.002G152400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]