PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G152400.1 | ||||||||
Common Name | B456_002G152400, LOC105785408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 685aa MW: 74508.4 Da PI: 6.3674 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.2e-07 | 273 | 293 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Gorai.002G152400.1 273 PCPDFRK-GACRRGDMCEYAHG 293 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 2.0E-18 | 10 | 151 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.99E-15 | 15 | 130 | No hit | No description |
SuperFamily | SSF48403 | 2.33E-17 | 15 | 135 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.3E-10 | 53 | 126 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.529 | 57 | 151 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0092 | 57 | 87 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.6E-5 | 58 | 73 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.449 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 6.1E-5 | 92 | 124 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.6E-5 | 111 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 268 | 294 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-5 | 273 | 293 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 273 | 295 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 273 | 295 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 301 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 65 | 303 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MNHLTLVTDD TFASLLELAA NNDVEGFKRW IEHDPFSVDE VGLWYGRQKG SKQMVNEERT 60 PLMVASTYGS IDVIKLIISS SDADVNRVCG RDKSTALHCA ASGGADNVID VVKLLLAAGA 120 DVNMVDANGH PPVDVIVVPP KLRDVKLTLE KLLATESSCF DSRVAAVANS DSPPLSPSQE 180 NGSLFSGSDS PIKSRPSDAP ISSVSEKKEY PIDPSLPDIK NSIYSTDELR MYSFKVRPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPDFRKG ACRRGDMCEY AHGVFECWLH 300 PAQYRTRLCK DGTSCARRVC FFAHTADELR PLYVSTGSAV PSPRSSASGA TAMDFAAAMS 360 LLPGSPSSVS VMSPSPFTPP MSPSVNGMPH SNVGWPQPNV PALHLPGSNL QSSRLRSSLN 420 ARDIQAEDFN LLPDFDLQQH QLINELSSLT QPSMSSSSFN RSGRMKTLTP SNLDDLFSAE 480 SSSPRYSDQA LAAAVFSPTH KSAVLNQFQQ QQSMLSPINT NYSPKSIEHP LLQASLSGRM 540 SSRNVEPISP MSSRVSMLAQ WEKQQEFRSL SSRELGSGLA AIVGSPVNSW SKWGSSNGKP 600 DWAVNADGVG KHRRSSSFEH GNGDEPDLSW VQSLVKESPT EIKDKIAAPV SGEGSSRNSD 660 TVDNAMLGAW LEQMQLDQLV AQQN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012466944.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A0D2R6I2 | 0.0 | A0A0D2R6I2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G152400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G152400.1 |
Entrez Gene | 105785408 |
Publications ? help Back to Top | |||
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