PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G152300.1

Common Name

B456_002G152300, LOC105785407

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 717aa MW: 77908.5 Da PI: 6.353

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G152300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.8e-08	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg Gorai.002G152300.1 305 PCPDFRK-GTCRRGDMCEYAHG 325 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	1.8E-17	40	176	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.17E-17	84	183	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.12E-15	86	165	No hit	No description
Pfam	PF12796	2.2E-10	87	156	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0018	87	117	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	17.767	87	163	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	6.0E-5	88	103	IPR002110	Ankyrin repeat
SMART	SM00248	2.7E-4	122	154	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.396	122	157	IPR002110	Ankyrin repeat
PRINTS	PR01415	6.0E-5	141	155	IPR002110	Ankyrin repeat
SMART	SM00356	3.1E-6	300	326	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-5	305	325	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	305	327	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.911	305	327	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-4	333	363	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	65	335	358	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence Send to blast
MCCGSERLNS KLTPRTSNSS FEDNRLPRVD MNHLTVATED TFASLLELAA NNDVEGFKRS 60 MEHDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVASMYGS IDVIKLILSS SDADVNRLCG 120 RDKSTALHCA ASGGADNVID VVKLLLAAGA DVNTVDANGH LPVDVIVVPP KLGAVKSTLE 180 ELLAIEGSGF DWNSQLAAVA NSDSFPLLPL KENGSLSSGS DSPMKSKPID APISSASEKK 240 EYPIDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGTCRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHTADE 360 LRPLYVSTGS AVPSPRSSAS GATAMDFAAA MSLLPGSPSS VSVMSPSPFT PPMSPSMNGM 420 SHSNVGWPQP NVPALHLLGS NLQSSRLRSS LNARDIQAED FNLLSDFDVQ QLRLMNELPG 480 LTQPSMSSSS FNRSGRMKTL TPSNLDDLFS AESSSPRYSD QAMAAAVFSP THKSAVLNQF 540 QQQQNMLSPI NTNFSPKSIE HPLLQASLSG RMSPRNVEPI SPMSSRVSML AQREKQQQFR 600 SLSSRELGSG SAAIVGSPVN SWSKWGSSNG KPDWAVNADG LDKHRRSSSF ELGNGDEPDL 660 SWVQSLVKES PTEIKEKIAA PVSGEVSSMN ADPVDNAVLG AWLEQMQLDQ LVAQKN*

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence Send to blast

MCCGSERLNS KLTPRTSNSS FEDNRLPRVD MNHLTVATED TFASLLELAA NNDVEGFKRS  60
MEHDPSGVDE VGLWYGRQKG SKQMVNEERT PLMVASMYGS IDVIKLILSS SDADVNRLCG  120
RDKSTALHCA ASGGADNVID VVKLLLAAGA DVNTVDANGH LPVDVIVVPP KLGAVKSTLE  180
ELLAIEGSGF DWNSQLAAVA NSDSFPLLPL KENGSLSSGS DSPMKSKPID APISSASEKK  240
EYPIDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGTCRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHTADE  360
LRPLYVSTGS AVPSPRSSAS GATAMDFAAA MSLLPGSPSS VSVMSPSPFT PPMSPSMNGM  420
SHSNVGWPQP NVPALHLLGS NLQSSRLRSS LNARDIQAED FNLLSDFDVQ QLRLMNELPG  480
LTQPSMSSSS FNRSGRMKTL TPSNLDDLFS AESSSPRYSD QAMAAAVFSP THKSAVLNQF  540
QQQQNMLSPI NTNFSPKSIE HPLLQASLSG RMSPRNVEPI SPMSSRVSML AQREKQQQFR  600
SLSSRELGSG SAAIVGSPVN SWSKWGSSNG KPDWAVNADG LDKHRRSSSF ELGNGDEPDL  660
SWVQSLVKES PTEIKEKIAA PVSGEVSSMN ADPVDNAVLG AWLEQMQLDQ LVAQKN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466943.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0D2MBC7	0.0	A0A0D2MBC7_GOSRA; Uncharacterized protein
STRING	Gorai.002G152300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Gorai.002G152300.1
Entrez Gene	105785407

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]