PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G138300.2
Common NameB456_002G138300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 284aa    MW: 30815 Da    PI: 7.7712
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G138300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.11.6e-15238271132
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                         C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ 
  Gorai.002G138300.2 238 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWAN 271
                         *******99***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.0E-599134IPR010399Tify domain
PROSITE profilePS5132011.80599134IPR010399Tify domain
PfamPF062002.5E-9103133IPR010399Tify domain
PfamPF062031.5E-14167209IPR010402CCT domain
PROSITE profilePS5101712.689167209IPR010402CCT domain
SMARTSM004012.5E-5232279IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-9234276No hitNo description
Gene3DG3DSA:3.30.50.104.7E-12236272IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.76E-12237272No hitNo description
PfamPF003202.8E-13238272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440238265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MKHLIIVTSG LPFSVQLESA AFRCVYMAAA NPQPLQVRPF EEHARGTMQI DDDDGDYADD  60
AMDDVEDANI NSVNVAEHGM GLIGGVIGGG GAAGGGVVRA LRTSELTLSF EGEVYVFPAV  120
TSEKVQAVLL LLGGRDIPTG VPTIEVPFDQ NNMGVADVSK RSNLSRRIAS LVRFREKRKE  180
RCFEKKIRYT VRKEVAQRMH RKNGQFASVK ESTSPSGWDS SQIGFQDGTR PETAIRSCQH  240
CGVSENNTPA MRRGPAGPRT LCNACGLMWA NKVCFTQFSV MLS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.1531e-140seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487426971e-140
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016706680.11e-165PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL74e-64GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0D2QCN20.0A0A0D2QCN2_GOSRA; Uncharacterized protein
STRINGGorai.002G138300.11e-169(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-55ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]