PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G131600.2 | ||||||||
Common Name | B456_002G131600, LOC105785170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 176aa MW: 19859.1 Da PI: 10.2209 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.9 | 3.2e-17 | 79 | 168 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +++s+v+ +l lp +f++++ +k ++ +tl de+g ++ + k+ + l++GWk+F+ a++L +gD +vF+l +r++f Gorai.002G131600.2 79 FIKSMLQSHVTGGFWLGLPVHFCKTNL-PK-RDEVMTLVDEEGHEYPTIY--LAKKTG--LSGGWKGFAVAHRLVDGDAIVFQLLQRTTF- 162 89*********************9884.33.5568***************..555444..9**********************9998888. PP .EEEEE- CS B3 92 lvvkvfr 98 +v ++r Gorai.002G131600.2 163 -KVYIIR 168 .888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-24 | 72 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-20 | 73 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.07E-26 | 77 | 168 | No hit | No description |
PROSITE profile | PS50863 | 12.266 | 79 | 170 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-22 | 79 | 170 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-16 | 79 | 168 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MKLRTVEKQL VVVRRSSRVA NKPAPVYQEV LVDKVMIPRR VSKHRDLSNR VYASDEARAE 60 ALEKAEKLES GLDPHFPVFI KSMLQSHVTG GFWLGLPVHF CKTNLPKRDE VMTLVDEEGH 120 EYPTIYLAKK TGLSGGWKGF AVAHRLVDGD AIVFQLLQRT TFKVYIIRVK GSEQS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012466565.1 | 1e-128 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
Swissprot | Q69V36 | 2e-63 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A0D2QCC6 | 1e-126 | A0A0D2QCC6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G131600.1 | 1e-127 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-56 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G131600.2 |
Entrez Gene | 105785170 |
Publications ? help Back to Top | |||
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