PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G131600.1
Common NameB456_002G131600, LOC105785170
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 226aa    MW: 25798.1 Da    PI: 10.4454
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G131600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.9e-17129218198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v+   +l lp +f++++  +k ++  +tl de+g ++   +    k+ +  l++GWk+F+ a++L +gD +vF+l +r++f 
  Gorai.002G131600.1 129 FIKSMLQSHVTGGFWLGLPVHFCKTNL-PK-RDEVMTLVDEEGHEYPTIY--LAKKTG--LSGGWKGFAVAHRLVDGDAIVFQLLQRTTF- 212
                         89*********************9884.33.5568***************..555444..9**********************9998888. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v ++r
  Gorai.002G131600.1 213 -KVYIIR 218
                         .888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-24122220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-20123220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-25127218No hitNo description
PfamPF023627.5E-16129218IPR003340B3 DNA binding domain
SMARTSM010195.4E-22129220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVVAKEKMMS YEEIRQKRVE ENKKRMEALN LPQLSTLLHT PSFKPSPRKQ MKLRTVEKQL  60
VVVRRSSRVA NKPAPVYQEV LVDKVMIPRR VSKHRDLSNR VYASDEARAE ALEKAEKLES  120
GLDPHFPVFI KSMLQSHVTG GFWLGLPVHF CKTNLPKRDE VMTLVDEEGH EYPTIYLAKK  180
TGLSGGWKGF AVAHRLVDGD AIVFQLLQRT TFKVYIIRVK GSEQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466565.11e-167PREDICTED: B3 domain-containing protein At5g42700
SwissprotQ9FMZ43e-78Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A0D2QCC61e-165A0A0D2QCC6_GOSRA; Uncharacterized protein
STRINGGorai.002G131600.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.18e-74B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]