PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G130300.3
Common NameB456_002G130300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 397aa    MW: 45351.4 Da    PI: 7.1952
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G130300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.2e-19321131197
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           ++rl +p kfa+++++k   + t+tl+ +sg  W+v+l+++   ++ ++ +GWk Fvk++ L ++Df++Fk++g s f   v +f
  Gorai.002G130300.3  32 DFLQRLEIPEKFAKNIKKK--LPETVTLKGPSGIIWDVRLTVDDD-DTLFFNGGWKTFVKDHSLVANDFLIFKYNGVSHF--DVLMF 113
                         55689********888755..888****************54443.4599************************998888..66655 PP

2B345.81.1e-14271351184
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f  +++p +v+++  + +p   ++++   k   + +++l+  + r+W+ ++ y ++++   l++GW++Fv++n+L+e D++vF+ 
  Gorai.002G130300.3 271 FMIIMKPTHVGRRFYMAVPTAWVAKYlP-K--DNADVILRM-NKRTWKTRFYYHRSRDCGGLSGGWRNFVNDNNLEEHDVCVFQP 351
                         677899********************42.3..334676655.78*******8877776678**********************94 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-2321114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.77622116IPR003340B3 DNA binding domain
CDDcd100171.19E-2024114No hitNo description
Gene3DG3DSA:2.40.330.107.0E-2324114IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-1625116IPR003340B3 DNA binding domain
PfamPF023622.6E-1634110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-20267366IPR015300DNA-binding pseudobarrel domain
CDDcd100176.93E-19271366No hitNo description
SuperFamilySSF1019366.67E-19271360IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.097271369IPR003340B3 DNA binding domain
PfamPF023624.8E-13271352IPR003340B3 DNA binding domain
SMARTSM010192.3E-12271364IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEDTCKDCRD WEEEIFWTHF QSVHFTQFLH GDFLQRLEIP EKFAKNIKKK LPETVTLKGP  60
SGIIWDVRLT VDDDDTLFFN GGWKTFVKDH SLVANDFLIF KYNGVSHFDV LMFDGKSLCE  120
KASSYFVRKC MHTESDATRQ TKRKVNENSD EILHNSSQCG LESGPEKSTN NDMDARPSRK  180
PIKSAASKKI RNSDNGTQSI HAKQSLVGKE LPTFPGEVKV ERLETEYEHT TMDGDGDVFG  240
LWHTTGKRFV TQFEKTNVIL KAQEALTNEG FMIIMKPTHV GRRFYMAVPT AWVAKYLPKD  300
NADVILRMNK RTWKTRFYYH RSRDCGGLSG GWRNFVNDNN LEEHDVCVFQ PANIGRKPMI  360
LDVNIFHVLQ KAVPLSQADP LPSSPELIAS TPDMDS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466546.10.0PREDICTED: B3 domain-containing protein REM16
RefseqXP_012466548.10.0PREDICTED: B3 domain-containing protein REM16
RefseqXP_012466549.10.0PREDICTED: B3 domain-containing protein REM16
TrEMBLA0A0D2Q5I00.0A0A0D2Q5I0_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.002G130300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-80B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]