PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G130300.3 | ||||||||
Common Name | B456_002G130300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 397aa MW: 45351.4 Da PI: 7.1952 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.8 | 2.2e-19 | 32 | 113 | 11 | 97 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++rl +p kfa+++++k + t+tl+ +sg W+v+l+++ ++ ++ +GWk Fvk++ L ++Df++Fk++g s f v +f Gorai.002G130300.3 32 DFLQRLEIPEKFAKNIKKK--LPETVTLKGPSGIIWDVRLTVDDD-DTLFFNGGWKTFVKDHSLVANDFLIFKYNGVSHF--DVLMF 113 55689********888755..888****************54443.4599************************998888..66655 PP | |||||||
2 | B3 | 45.8 | 1.1e-14 | 271 | 351 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f +++p +v+++ + +p ++++ k + +++l+ + r+W+ ++ y ++++ l++GW++Fv++n+L+e D++vF+ Gorai.002G130300.3 271 FMIIMKPTHVGRRFYMAVPTAWVAKYlP-K--DNADVILRM-NKRTWKTRFYYHRSRDCGGLSGGWRNFVNDNNLEEHDVCVFQP 351 677899********************42.3..334676655.78*******8877776678**********************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-23 | 21 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.776 | 22 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.19E-20 | 24 | 114 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-23 | 24 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.5E-16 | 25 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-16 | 34 | 110 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-20 | 267 | 366 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.93E-19 | 271 | 366 | No hit | No description |
SuperFamily | SSF101936 | 6.67E-19 | 271 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.097 | 271 | 369 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-13 | 271 | 352 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-12 | 271 | 364 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MEDTCKDCRD WEEEIFWTHF QSVHFTQFLH GDFLQRLEIP EKFAKNIKKK LPETVTLKGP 60 SGIIWDVRLT VDDDDTLFFN GGWKTFVKDH SLVANDFLIF KYNGVSHFDV LMFDGKSLCE 120 KASSYFVRKC MHTESDATRQ TKRKVNENSD EILHNSSQCG LESGPEKSTN NDMDARPSRK 180 PIKSAASKKI RNSDNGTQSI HAKQSLVGKE LPTFPGEVKV ERLETEYEHT TMDGDGDVFG 240 LWHTTGKRFV TQFEKTNVIL KAQEALTNEG FMIIMKPTHV GRRFYMAVPT AWVAKYLPKD 300 NADVILRMNK RTWKTRFYYH RSRDCGGLSG GWRNFVNDNN LEEHDVCVFQ PANIGRKPMI 360 LDVNIFHVLQ KAVPLSQADP LPSSPELIAS TPDMDS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012466546.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16 | ||||
Refseq | XP_012466548.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16 | ||||
Refseq | XP_012466549.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16 | ||||
TrEMBL | A0A0D2Q5I0 | 0.0 | A0A0D2Q5I0_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.002G130300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-80 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G130300.3 |
Publications ? help Back to Top | |||
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