PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G122200.1 | ||||||||
Common Name | B456_002G122200, LOC105784201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 181aa MW: 19870.7 Da PI: 10.3771 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.7 | 2.9e-14 | 110 | 159 | 3 | 52 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 ++ r +rk+kNR +A rsR+RK+a++ eLe +v+ L +eN +L+ + ++l Gorai.002G122200.1 110 DDPRHKRKIKNRKSAARSRARKQAYTNELELEVARLLEENVKLRRQQDKL 159 6889****************************************877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.1E-10 | 108 | 172 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.898 | 110 | 159 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 9.79E-24 | 113 | 165 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.4E-12 | 113 | 160 | No hit | No description |
SuperFamily | SSF57959 | 4.85E-10 | 113 | 160 | No hit | No description |
Pfam | PF00170 | 8.9E-12 | 113 | 159 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 115 | 130 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEEVWGDIGL ASLNDHPAVT PTANPPSFPS VILQDFLAIP INKEMPPTAR SGCGTSLTEE 60 TTLFGSLPPT PATLFTLNAR SIASVAVKAP APSFPSSCRK KGQENEENSD DPRHKRKIKN 120 RKSAARSRAR KQAYTNELEL EVARLLEENV KLRRQQDKLL ASPRQIPKRN TLCRTLTAPF 180 * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in shoot apex. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:25661797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465462.1 | 1e-129 | PREDICTED: protein FD-like | ||||
Refseq | XP_012465469.1 | 1e-129 | PREDICTED: protein FD-like | ||||
Refseq | XP_012465476.1 | 1e-129 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 7e-39 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A0D2Q4X7 | 1e-128 | A0A0D2Q4X7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G122200.1 | 1e-129 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 5e-19 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G122200.1 |
Entrez Gene | 105784201 |