PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G115800.1

Common Name

B456_002G115800, LOC105783598

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 926aa MW: 102796 Da PI: 6.7979

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G115800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.7	1.3e-29	606	657	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk+Lgvc+T+LKriCRq+GIkRWP+Rkik++ Gorai.002G115800.1 606 AEKTITLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGIKRWPSRKIKKV 657 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.905	596	677	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	609	657	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.16E-23	828	915	No hit	No description
PROSITE profile	PS51745	26.329	829	912	IPR000270	PB1 domain
SMART	SM00666	5.2E-28	829	912	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.2E-22	830	909	No hit	No description
Pfam	PF00564	3.1E-19	831	911	IPR000270	PB1 domain
CDD	cd06407	5.41E-41	831	910	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MEDTIFSQGT MLGGLPDSAM DFDYMDELLL DGCWLETTQG SDFLNPTLPF SNNFFDPAFT 60 WPTSESNAGD LGGGLSHQGE NQRSLLSGNS HWNEAQGESL VSPHFSQSHS LDSDCVTDGS 120 EPNRRWWIGP RVNSGPATSV MQRLIQALGY IKAFGKEKDV LVQLWLPVNR GGRRFLTTSE 180 QPFSLDPNSQ KLASYRNISV KYDFPAEEDS KDIAGLPGRV FLSKVPEWTP DVRFFKRDEY 240 PRVGHAQEHD VRGTFALPVF EQGSGTCLGV IEVVMTTEKI KIQPELESVC KALEAVNLRS 300 SITSRTQNIK AYNNCYQAAL PEIKELLRCA CETHRLPLAQ AWVPCIQQGK EGCRHSSENY 360 VHCVSTVDDA CCIADPSIQG FHEACSEHHL LKGQGVIGRA FLTNQPCFST DITSFKKTEY 420 PLAHHAMMFN LHAAVALRFR SIHTGKADFV LEFFLPAHCR DPEGQRKMLN SLSIIIQQVC 480 CSLRVVTDKE LVEETDLAVS EVVAPSDGLP IREESSKRQC TNHHSKKLSG ESSSCLTKVQ 540 KSSNTALVLE KEKPRPMLDE KLPEVEQHQQ HISLQESVEC GDSTFNEISF SSVTMGKTSE 600 KRRSKAEKTI TLQVLRQYFA GSLKDAAKSL GVCPTTLKRI CRQHGIKRWP SRKIKKVGHS 660 LQKLQHVIDS VQGASGAFHI SNFYANFPEL ASPKLLGNSA LSTSPLNDKP KQINIQPEGG 720 NFLSQAALSN SPSSSCSQSS SSSHSCSSGT HRPSNFNMSG KEDHIIGDNS GDGELKRVKS 780 DVELHASSQE GPKLFPRSQS LRSLKEQLIC DNLQPISKNT SPIAHDLEAQ RVKVTYGDEK 840 IRFRMQSKWR FKDLLHEIAR RFNIDDISRF DLKYLDDDSE WVLLTCDADM VECIDVCGSS 900 QGNTIKLSLQ VSHHHLDQFS GSTGS*

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MEDTIFSQGT MLGGLPDSAM DFDYMDELLL DGCWLETTQG SDFLNPTLPF SNNFFDPAFT  60
WPTSESNAGD LGGGLSHQGE NQRSLLSGNS HWNEAQGESL VSPHFSQSHS LDSDCVTDGS  120
EPNRRWWIGP RVNSGPATSV MQRLIQALGY IKAFGKEKDV LVQLWLPVNR GGRRFLTTSE  180
QPFSLDPNSQ KLASYRNISV KYDFPAEEDS KDIAGLPGRV FLSKVPEWTP DVRFFKRDEY  240
PRVGHAQEHD VRGTFALPVF EQGSGTCLGV IEVVMTTEKI KIQPELESVC KALEAVNLRS  300
SITSRTQNIK AYNNCYQAAL PEIKELLRCA CETHRLPLAQ AWVPCIQQGK EGCRHSSENY  360
VHCVSTVDDA CCIADPSIQG FHEACSEHHL LKGQGVIGRA FLTNQPCFST DITSFKKTEY  420
PLAHHAMMFN LHAAVALRFR SIHTGKADFV LEFFLPAHCR DPEGQRKMLN SLSIIIQQVC  480
CSLRVVTDKE LVEETDLAVS EVVAPSDGLP IREESSKRQC TNHHSKKLSG ESSSCLTKVQ  540
KSSNTALVLE KEKPRPMLDE KLPEVEQHQQ HISLQESVEC GDSTFNEISF SSVTMGKTSE  600
KRRSKAEKTI TLQVLRQYFA GSLKDAAKSL GVCPTTLKRI CRQHGIKRWP SRKIKKVGHS  660
LQKLQHVIDS VQGASGAFHI SNFYANFPEL ASPKLLGNSA LSTSPLNDKP KQINIQPEGG  720
NFLSQAALSN SPSSSCSQSS SSSHSCSSGT HRPSNFNMSG KEDHIIGDNS GDGELKRVKS  780
DVELHASSQE GPKLFPRSQS LRSLKEQLIC DNLQPISKNT SPIAHDLEAQ RVKVTYGDEK  840
IRFRMQSKWR FKDLLHEIAR RFNIDDISRF DLKYLDDDSE WVLLTCDADM VECIDVCGSS  900
QGNTIKLSLQ VSHHHLDQFS GSTGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464609.1	0.0	PREDICTED: protein NLP4-like
Refseq	XP_012464617.1	0.0	PREDICTED: protein NLP4-like
Refseq	XP_012464624.1	0.0	PREDICTED: protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A0D2M9P1	0.0	A0A0D2M9P1_GOSRA; Uncharacterized protein
STRING	Gorai.002G115800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G115800.1
Entrez Gene	105783598

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]