PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G113300.1
Common NameB456_002G113300, LOC105783296
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 367aa    MW: 40904.4 Da    PI: 6.3123
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G113300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52381651128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp  +k + +ewyfFs rd+ky+tg r+nrat +gyWkatgkd+e
  Gorai.002G113300.1  38 LPPGFRFHPTDEELITFYLASKVFNGSFCG-VDIAEVDLNRCEPWELPDVAKMGAREWYFFSLRDRKYPTGVRTNRATGAGYWKATGKDRE 127
                         79*************************877.34***************88888999*********************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v+s+ +g+l g+kktLvfy+grap+g+kt Wvmheyrl
  Gorai.002G113300.1 128 VYSAsTGALLGMKKTLVFYNGRAPRGVKTMWVMHEYRL 165
                         **9878889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-6233187IPR003441NAC domain
PROSITE profilePS5100558.16238187IPR003441NAC domain
PfamPF023654.3E-2739165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MFLHSFQSQQ LAFTLNKMLA VEEVLSELGG EEVNEQGLPP GFRFHPTDEE LITFYLASKV  60
FNGSFCGVDI AEVDLNRCEP WELPDVAKMG AREWYFFSLR DRKYPTGVRT NRATGAGYWK  120
ATGKDREVYS ASTGALLGMK KTLVFYNGRA PRGVKTMWVM HEYRLDGDFS CRHTCKEEWV  180
ICRIIHKTGE KKNGVAAAQG LGYILELSSL SSTTKTTNCL RPLLETPTPL LESQTQISMQ  240
AAHNSFLEND LKSLINPVVY PANGFQPSFT ATPTTFSSTP DKNASSNSSA AASMLFKSLL  300
SHQECVLREQ AAATIPKQCK TEANFSNFQL PDSTLSWTEK MHPNPCQDPM FFDMDYNNSV  360
LGFAEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-523519012171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at the globular stage, mostly in the apical part of the embryo. During the triangular stage, confined to the boundary of emerging cotyledons. Later restricted to the center of the apical part of the embryo and to seedling apex, at the boundaries of the cotyledon margins and the boundaries between the SAM and the cotyledons. Localized in a one-cell-wide ring at the boundary between trichomes or lateral roots and epidermis. Accumulates at the boundaries between leaf primordia and the shoot meristem and between floral primordia and the inflorescence meristem. Found in the adaxial axils of secondary inflorescences and pedicels, and in axiallary buds. In flowers, expressed in a ring at the bases of sepals and petals. In carpels, confined to the boundaries between ovule primordia. In ovules, localized in a ring at the boundary between the nucellus and the chalaza. In the mature embryo sac, detected in the two polar nuclei of the central cell. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
UniprotTISSUE SPECIFICITY: In a general manner, present at the boundaries between mersitems and araising primordia. {ECO:0000269|PubMed:12837947}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472440.0KC847244.1 Gossypium hirsutum NAC domain protein NAC67 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464128.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_012464135.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_012464144.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8511e-109NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0D2QBB00.0A0A0D2QBB0_GOSRA; Uncharacterized protein
STRINGGorai.002G113300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.17e-96NAC family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  3. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  4. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  5. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  6. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]