PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G107000.1

Common Name

B456_002G107000, LOC105782622

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 261aa MW: 29325.8 Da PI: 4.9159

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G107000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.7e-10	143	186	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r RR++i ++ +eL +l+P K++ ae+L+ A +YIk+Lq Gorai.002G107000.1 143 IAARERRRKITKKTQELGKLVPGG-----SKMNTAEMLQSAFKYIKYLQ 186 67799***************95.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.67E-10	134	189	No hit	No description
SuperFamily	SSF47459	2.09E-12	135	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.576	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-11	141	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-11	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.9E-8	143	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MVLSSYFDCQ TDVPMYEIKT VEAESETQLA AADGLECYWN AFELPCTFPA SYLDPQNYTS 60 LLPLYSIPPE VIPYETLSSY PCPKRHKLIE DHYCSDLMPG VFDGVAVSPC PLLEDHQINL 120 EGMKTVGNCN KISEEKCVTV QSIAARERRR KITKKTQELG KLVPGGSKMN TAEMLQSAFK 180 YIKYLQAQVG TLQVMDSFPE NEKRSWDGKM EMVTSPKVQE KLYMEDKCLV AKDAVLSLTT 240 LFKPPLSHEL TRLLSLPSND *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462937.1	0.0	PREDICTED: transcription factor bHLH53-like
TrEMBL	A0A0D2M9A7	0.0	A0A0D2M9A7_GOSRA; Uncharacterized protein
STRING	Gorai.002G107000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16954	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	9e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G107000.1
Entrez Gene	105782622

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]