PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G089900.1
Common NameB456_002G089900, LOC105780827
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 535aa    MW: 58472.6 Da    PI: 7.0382
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G089900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-153279148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed  l+d+v+ +G g+W+++ +  g+ R++k+c++rw ++l
  Gorai.002G089900.1 32 KGPWTAAEDAVLADYVRTHGEGNWNAVQKNTGLARCGKSCRLRWANHL 79
                        79******************************************9986 PP
2Myb_DNA-binding49.21.2e-1585128146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++++eE+ ++v++++++G++ W++ a  ++ gRt++++k++w++
  Gorai.002G089900.1  85 KGAFSPEEERIIVELHAKMGNK-WARMATQLP-GRTDNEIKNYWNT 128
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1582779IPR017930Myb domain
SuperFamilySSF466891.17E-2831126IPR009057Homeodomain-like
SMARTSM007177.3E-123181IPR001005SANT/Myb domain
PfamPF002496.2E-143279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-233386IPR009057Homeodomain-like
CDDcd001678.56E-103479No hitNo description
PROSITE profilePS5129425.56780134IPR017930Myb domain
SMARTSM007178.2E-1684132IPR001005SANT/Myb domain
PfamPF002491.9E-1485128IPR001005SANT/Myb domain
CDDcd001673.13E-1187128No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2587133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MMMMGGNNQI TTQNEGGGSN NGGGEGGIML KKGPWTAAED AVLADYVRTH GEGNWNAVQK  60
NTGLARCGKS CRLRWANHLR PNLKKGAFSP EEERIIVELH AKMGNKWARM ATQLPGRTDN  120
EIKNYWNTRV KRRQRQGLPL YPPEIQPLYS QHQRNQHRSL PSTPLPSPTA TSTSSFSFQT  180
PPNPSSSTTL HGSILTPAHP LHIPRSASSH VLYNPQTPPP LHSASAVSTP CPSPLPSSSP  240
STPTPVSPLQ SPHKPAFSTL PLFDSSTSNT CNNNINTNNA ILQSPSDFFF PRATPPLQTP  300
MRYKRFRPDV SESINNERHN NSISVNGGCS STSSSFMSQY PPFQKTSFFN SHAAPNVTTS  360
TPLTSPHYSP SYTLDPVTLD LASSSRILAD HQNFDNGQFI STPGFDYTSK TDDLPSNQFL  420
SLDGTSEVTF DTKGNCNYIS NDQNNHHHLS IHFGGGGLLD DMLEEAQLLA GDNDILRRES  480
CLDGFNTSSD GLTSGKEETV TDQEINATQE EYSRLLNAIP SSMPMPDWYN NCGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30301335107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5787036e-95JX578703.1 Gossypium hirsutum clone NBRI_GE10781 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460804.10.0PREDICTED: myb-like protein A
TrEMBLA0A0D2M8I70.0A0A0D2M8I7_GOSRA; Uncharacterized protein
STRINGGorai.002G089900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.27e-70myb domain protein 101
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]