PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G079200.3

Common Name

B456_002G079200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 475aa MW: 52213.6 Da PI: 7.1401

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G079200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	6.9e-06	365	403	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Gorai.002G079200.3 365 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 403 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.595	354	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.92E-7	364	407	No hit	No description
SuperFamily	SSF47459	5.23E-10	364	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0056	365	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-8	368	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MADEFNTGTN WWDSSRTAGS SSSSSGLNNS FAWATEMVDI KAARSPMDSV SSVSGSSVVF 60 HDNPKLQVGL GPDHHHHHHH HHHHPPSDLQ MMGLGLPSQA MDWNQALLRG DKSEVSFRSM 120 LQDHNLNASN ANYPHQQQET GGIGSSQLHW RDKMFTGDAE LKQIGRGFSL DQSQFSPHGS 180 SSDSTVTCQS LPSSFQMDSS TALYGSPSTI LQGLLGSENQ PQQQQQQQQS SYENRSMNYQ 240 YGAAAATSYG MNTNDQLLPN ALSKVPQFLR SSPPKQQLHG QLHFSNNAPF WNPSAAAAAS 300 MTDHVRPGFF PSLQTQFQTG TFDEKPKNIS EVRETSTVVK KSGNEPASTK RPRNETPSTM 360 PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHAQVLST PYMKNEATIQ 420 HHQQNPEKSK DPAEGPKQDL RSRGLCLVPV SSTFPLTNES PVDFWTPTFG GTFR*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MADEFNTGTN WWDSSRTAGS SSSSSGLNNS FAWATEMVDI KAARSPMDSV SSVSGSSVVF  60
HDNPKLQVGL GPDHHHHHHH HHHHPPSDLQ MMGLGLPSQA MDWNQALLRG DKSEVSFRSM  120
LQDHNLNASN ANYPHQQQET GGIGSSQLHW RDKMFTGDAE LKQIGRGFSL DQSQFSPHGS  180
SSDSTVTCQS LPSSFQMDSS TALYGSPSTI LQGLLGSENQ PQQQQQQQQS SYENRSMNYQ  240
YGAAAATSYG MNTNDQLLPN ALSKVPQFLR SSPPKQQLHG QLHFSNNAPF WNPSAAAAAS  300
MTDHVRPGFF PSLQTQFQTG TFDEKPKNIS EVRETSTVVK KSGNEPASTK RPRNETPSTM  360
PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHAQVLST PYMKNEATIQ  420
HHQQNPEKSK DPAEGPKQDL RSRGLCLVPV SSTFPLTNES PVDFWTPTFG GTFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583456	1e-83	JX583456.1 Gossypium hirsutum clone NBRI_GE16500 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459379.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X3
Refseq	XP_012459388.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X4
Swissprot	Q8GXT3	1e-86	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A0D2R2F6	0.0	A0A0D2R2F6_GOSRA; Uncharacterized protein
STRING	Gorai.002G079200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-78	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G079200.3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]