PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G079200.2
Common NameB456_002G079200, LOC105779907
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 477aa    MW: 52399.9 Da    PI: 7.1401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G079200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.9e-063654031154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Gorai.002G079200.2 365 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 403
                         5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.595354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.29E-7364408No hitNo description
SuperFamilySSF474591.09E-11364422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-9364422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0084365409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MADEFNTGTN WWDSSRTAGS SSSSSGLNNS FAWATEMVDI KAARSPMDSV SSVSGSSVVF  60
HDNPKLQVGL GPDHHHHHHH HHHHPPSDLQ MMGLGLPSQA MDWNQALLRG DKSEVSFRSM  120
LQDHNLNASN ANYPHQQQET GGIGSSQLHW RDKMFTGDAE LKQIGRGFSL DQSQFSPHGS  180
SSDSTVTCQS LPSSFQMDSS TALYGSPSTI LQGLLGSENQ PQQQQQQQQS SYENRSMNYQ  240
YGAAAATSYG MNTNDQLLPN ALSKVPQFLR SSPPKQQLHG QLHFSNNAPF WNPSAAAAAS  300
MTDHVRPGFF PSLQTQFQTG TFDEKPKNIS EVRETSTVVK KSGNEPASTK RPRNETPSTM  360
PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHAQVSVL STPYMKNEAT  420
IQHHQQNPEK SKDPAEGPKQ DLRSRGLCLV PVSSTFPLTN ESPVDFWTPT FGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5834561e-83JX583456.1 Gossypium hirsutum clone NBRI_GE16500 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459388.10.0PREDICTED: transcription factor bHLH123-like isoform X4
SwissprotQ8GXT35e-89BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0D2M8840.0A0A0D2M884_GOSRA; Uncharacterized protein
STRINGGorai.002G079200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.17e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]