PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G075900.1
Common NameB456_002G075900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 427aa    MW: 47478.1 Da    PI: 7.1661
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G075900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.39.1e-16272364195
                         EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                         f+k+lt sdv ++ grlvlpk++a e++g+  +++ lt++d++g+ Wev ++y  + ++++yvl+ G k++    + ++gD+v+F+  +r 
  Gorai.002G075900.1 272 FEKKLTASDVDTRnGRLVLPKRCA-EISGQ--QGIFLTVQDTKGNDWEVFYRYwsNTNGKMYVLE-GLKDYMIMMEWEAGDTVTFY--KRe 356
                         99********988799******99.88777..7889*****************544444458888.********************..443 PP

                         SEE..EEE CS
                  B3  88 sefelvvk 95 
                         ++++l+++
  Gorai.002G075900.1 357 EDEKLFMG 364
                         66655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-21262372IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-15269365IPR015300DNA-binding pseudobarrel domain
CDDcd100177.38E-18270367No hitNo description
SMARTSM010191.9E-9272368IPR003340B3 DNA binding domain
PfamPF023621.6E-12272364IPR003340B3 DNA binding domain
PROSITE profilePS508639.009273369IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAAPTVFIGT CFHCQSQSDV FFSGWQLRDG SFALLCHPCG KVWYCFAGAF YPPFVNSAFL  60
FPLLRIMFEE QAEEKWSRNP GVCCHSLSSH TIYCFLSYRR LSSAFVEGRF CETFHPEASG  120
WRECDSCNKG IHCGCIMAAH SYAILDFGGV KCLECCLNEA LALHRNSPTF SNPEEMQASD  180
SHPKASDDTE ETVTGVDPIA SPDSVALNAS PDKIGTPTPG AVPAAETEGE SSVNSPAGTK  240
KSRKKKGRKN RKDASKQHQI QARAKSSLIP LFEKKLTASD VDTRNGRLVL PKRCAEISGQ  300
QGIFLTVQDT KGNDWEVFYR YWSNTNGKMY VLEGLKDYMI MMEWEAGDTV TFYKREEDEK  360
LFMGFKKYQA PESAQKASSL NLVLFIEGVG SSFLYMLSSV SELLLSRKMQ VIGMNDKKTK  420
AYILSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C3e-262583679122B3 domain-containing transcription repressor VAL1
5yzz_C3e-262583679122B3 domain-containing transcription repressor VAL1
5z00_C3e-262583679122B3 domain-containing transcription repressor VAL1
5z00_G3e-262583679122B3 domain-containing transcription repressor VAL1
5z00_K3e-262583679122B3 domain-containing transcription repressor VAL1
5z00_M3e-262583679122B3 domain-containing transcription repressor VAL1
6j9a_A4e-2625836710123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016733512.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
TrEMBLA0A0D2M7X90.0A0A0D2M7X9_GOSRA; Uncharacterized protein
STRINGGorai.002G075900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1811179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-26HSI2-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]