PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G067100.1
Common NameB456_002G067100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 178aa    MW: 20854.3 Da    PI: 8.467
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G067100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-171467356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++ ++++eq++ Le+ F  n+++  e + +LA++lg++ rqV +W+qN+Ra++k
  Gorai.002G067100.1 14 NKKRLNQEQVRLLERSFSANKKLEPELKLQLANQLGVPPRQVAIWYQNKRARWK 67
                        566799***********************************************9 PP
2HD-ZIP_I/II108.74.2e-3514105293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +k+rl++eqv+lLE+sF++++kLepe K +la++Lg+ prqva+W+qn+RAR+kt+ +E d+++L+ ++++  +e++rLek+v+ L+eel+
  Gorai.002G067100.1  14 NKKRLNQEQVRLLERSFSANKKLEPELKLQLANQLGVPPRQVAIWYQNKRARWKTQSMELDCNTLQVKLENALSEKRRLEKDVKYLQEELR 104
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Gorai.002G067100.1 105 K 105
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.823969IPR001356Homeobox domain
SuperFamilySSF466893.89E-171177IPR009057Homeodomain-like
SMARTSM003897.6E-151173IPR001356Homeobox domain
CDDcd000862.67E-121270No hitNo description
PfamPF000464.6E-151467IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-171672IPR009057Homeodomain-like
PROSITE patternPS0002704467IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDFQSQRLYS PKYNKKRLNQ EQVRLLERSF SANKKLEPEL KLQLANQLGV PPRQVAIWYQ  60
NKRARWKTQS MELDCNTLQV KLENALSEKR RLEKDVKYLQ EELRKAQETM FAMNNNQRAN  120
HHHHQQQQDQ PLNYFVSCNS TGSSEEGGSS SFHEDHEVLQ IDELYACLIG GDRSTWS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164390.0JX616439.1 Gossypium hirsutum clone NBRI_GE61116 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457983.11e-130PREDICTED: homeobox-leucine zipper protein ATHB-52
RefseqXP_016727961.11e-130PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A0D2Q1R81e-129A0A0D2Q1R8_GOSRA; Uncharacterized protein
TrEMBLA0A1U8MMA21e-129A0A1U8MMA2_GOSHI; homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A2P5QI471e-129A0A2P5QI47_GOSBA; Uncharacterized protein
STRINGGorai.002G067100.11e-130(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121072632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.15e-39homeobox protein 52
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]