PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G065900.2 | ||||||||
Common Name | B456_002G065900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 165aa MW: 18716.5 Da PI: 10.5789 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.7 | 7e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +ft++++ +e++ ++ n+ p +e e LA+k ++ +qV +WFqNrR+ Gorai.002G065900.2 13 RFTQTEVAGMETVLQEhhNQMPAREILESLAEKFsesterkgrtIVQFKQVWNWFQNRRYAI 74 699999999999999777999********************9999999***********865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-11 | 4 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.3E-4 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.718 | 13 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-8 | 13 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.63E-4 | 13 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MGRPPSNGGP AFRFTQTEVA GMETVLQEHH NQMPAREILE SLAEKFSEST ERKGRTIVQF 60 KQVWNWFQNR RYAIRAKSSK VPGKLNVTSM PRDDSNPVRN VLQPVAAPMP PPMAAPMSTA 120 MPATTGRMDF DSVFEVLKAS FLFPKFGINN WMLHSPFSYL SEIWK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457877.1 | 6e-95 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like | ||||
Swissprot | Q8RWJ7 | 1e-47 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A0D2NIV8 | 1e-119 | A0A0D2NIV8_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.002G065900.1 | 1e-103 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 1e-47 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G065900.2 |
Publications ? help Back to Top | |||
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