PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G065900.1

Common Name

B456_002G065900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 167aa MW: 19133.2 Da PI: 10.4141

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G065900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16	2e-05	33	76	22	55
SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 n+ p +e e LA+k ++ +qV +WFqNrR+ Gorai.002G065900.1 33 NQMPAREILESLAEKFsesterkgrtIVQFKQVWNWFQNRRYAI 76 788888888888888888888888888899***********865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.908	24	79	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-6	24	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-9	25	80	IPR009057	Homeodomain-like
CDD	cd00086	0.00161	31	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MVALLSVSPK LRSYWNPGVF EISMETVLQE HHNQMPAREI LESLAEKFSE STERKGRTIV 60 QFKQVWNWFQ NRRYAIRAKS SKVPGKLNVT SMPRDDSNPV RNVLQPVAAP MPPPMAAPMS 120 TAMPATTGRM DFDSVFEVLK ASFLFPKFGI NNWMLHSPFS YLSEIWK

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457877.1	6e-78	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
Swissprot	Q8RWJ7	2e-35	SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBL	A0A0D2Q1I4	1e-120	A0A0D2Q1I4_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.002G065900.1	1e-120	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33810	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.2	2e-35	sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Link Out ? help Back to Top
Phytozome	Gorai.002G065900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]