PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G064900.2

Common Name

B456_002G064900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 238aa MW: 26212 Da PI: 5.6083

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G064900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.4e-10	190	224	5	39
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 kr +r NR +A+rsR RK+++i eLe+ v +L+ Gorai.002G064900.2 190 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQ 224 8999***************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.6E-10	190	224	No hit	No description
Pfam	PF00170	1.2E-8	190	224	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.83E-9	190	224	No hit	No description
CDD	cd14703	9.04E-19	191	231	No hit	No description
PROSITE pattern	PS00036	0	193	208	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MAQLPPKVPN MTQNWPSFPH QRLPTMANII STTANTATMN ASHHHQPSWV DEFLDFSSAR 60 RGAHRRSISD SIAFLEQPLV EECRDSNTNH NNNAMITETN VFDRLDDEQL MSMFSDDVAV 120 TMAAAPTLSS SNPSTPTSDQ NSNNDEKPVP SLDLQQPKNE PGEVESSCKP EPQAAQPPST 180 SNGDPIVDPK RVKRILANRQ SAQRSRVRKL QYISELERSV TTLQGCILGS SKTDSQC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.25	0.0	flower\|seedling\| flowering

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457700.1	1e-164	PREDICTED: basic leucine zipper 61-like
Swissprot	Q9M2K4	2e-60	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A0D2Q8K6	1e-174	A0A0D2Q8K6_GOSRA; Uncharacterized protein
STRING	Gorai.002G064900.1	1e-164	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	2e-54	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G064900.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]