PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G064500.1 | ||||||||
Common Name | B456_002G064500, LOC105778473 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 445aa MW: 48127.5 Da PI: 6.9763 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.9 | 6e-37 | 35 | 154 | 2 | 117 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasn 84 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++ + + +s ++sn Gorai.002G064500.1 35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELppwnpetlN--------TTTSIAKTSN 117 79**************************************************************554443331........2222222222 PP TCP 85 sssg....kaaksaakskksqksaasalnlakesrak 117 ++ + + ++++ + + ++s + + nla+ s + Gorai.002G064500.1 118 QEDQnattATDNDKPYQFHINHSGNLVENLAAGSGTR 154 2222111133333334444455555555555544333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-34 | 35 | 141 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.543 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MGDSHHQAAT SSRLGIRHSG GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKP AIDELAELPP WNPETLNTTT SIAKTSNQED 120 QNATTATDND KPYQFHINHS GNLVENLAAG SGTRRRTATI MGNEVQSLQQ QEMGDNPNNN 180 SGFLPPSLVS DEIADTIKSF FPVGASSETP SSSIQFQNYP PDLLSRTSSH SQDLRLSLQS 240 FPEPILLHHH HHHAQAATAQ AHHSEPVLFS GSSPLAGFDG SSAGWEHHHQ HPAEIGRFQR 300 LFAWNNSGAA ADSSGGGGAG GSSGVGGGFI FGTPPPQSLP PAFGQNSQLF SQRGPLQSSN 360 TPLVRAWIDQ PISTTDQHQH HHHQQHHHHQ IPENIHHHTA LSGIGFTTPG VFSGFRVPAR 420 IQGEEDEHDS IANKLSSASS DSHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.813 | 0.0 | flower|seedling| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48743661 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457642.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-114 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A0D2R1L3 | 0.0 | A0A0D2R1L3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G064500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-112 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G064500.1 |
Entrez Gene | 105778473 |