PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G054200.4

Common Name

B456_002G054200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 134aa MW: 14714.5 Da PI: 8.3989

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G054200.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	95.7	1.1e-29	4	124	2	135
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 +++s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG C++l svnla + q +a ++ ++ + ++e ++ +++ ++ Gorai.002G054200.4 4 SHNSAPEQLCYIPCNLCNIILAVNVPCNSLFETVTVRCGQCSNLCSVNLAASFQSRAGKDV--------QVPNYTSSEYRIDLGSSSRCKN 86 68899********************************************9999999885........3334444444443333333222 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfike 135 + ++++++++ ++e v+rPP+kr r+Ps yn+fik Gorai.002G054200.4 87 KLPKRATTINTTTQER-----VVNRPPDKRHRAPSLYNQFIKG 124 2223333333333333.....469***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-34	8	124	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MSSSHNSAPE QLCYIPCNLC NIILAVNVPC NSLFETVTVR CGQCSNLCSV NLAASFQSRA 60 GKDVQVPNYT SSEYRIDLGS SSRCKNKLPK RATTINTTTQ ERVVNRPPDK RHRAPSLYNQ 120 FIKGDSEDQA EQS*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455973.1	2e-86	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_012455982.1	2e-86	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_012455990.1	2e-86	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_016732275.1	2e-86	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_016732276.1	2e-86	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	7e-46	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0D2PYB0	2e-93	A0A0D2PYB0_GOSRA; Uncharacterized protein
STRING	Gorai.002G054200.1	6e-86	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-48	YABBY family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G054200.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]