PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G054200.1 | ||||||||
Common Name | B456_002G054200, LOC105777314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | YABBY | ||||||||
Protein Properties | Length: 183aa MW: 20604.3 Da PI: 8.7621 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 178.2 | 4.9e-55 | 4 | 159 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 +++s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG C++l svnla + q +a ++ ++ + ++e ++ +++ ++ Gorai.002G054200.1 4 SHNSAPEQLCYIPCNLCNIILAVNVPCNSLFETVTVRCGQCSNLCSVNLAASFQSRAGKDV--------QVPNYTSSEYRIDLGSSSRCKN 86 68899**********************************************9999999885........3334444444443333333222 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++++++++ ++e v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl Gorai.002G054200.1 87 KLPKRATTINTTTQER-----VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 159 2223333333333333.....469****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.7E-62 | 8 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.44E-6 | 98 | 152 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSSSHNSAPE QLCYIPCNLC NIILAVNVPC NSLFETVTVR CGQCSNLCSV NLAASFQSRA 60 GKDVQVPNYT SSEYRIDLGS SSRCKNKLPK RATTINTTTQ ERVVNRPPDK RHRAPSLYNQ 120 FIKEEIQRIK LNNPDITHRE AFSTAAKNWA RFPHIHFGLM LETDNQPKLN DDSTEPFHQL 180 LK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ526781 | 6e-37 | HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455973.1 | 1e-135 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_012455982.1 | 1e-135 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_012455990.1 | 1e-135 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_016732275.1 | 1e-135 | PREDICTED: axial regulator YABBY 5-like | ||||
Refseq | XP_016732276.1 | 1e-135 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 2e-77 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0D2Q5K0 | 1e-133 | A0A0D2Q5K0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8MZQ2 | 1e-133 | A0A1U8MZQ2_GOSHI; axial regulator YABBY 5-like | ||||
STRING | Gorai.002G054200.1 | 1e-134 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5538 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 9e-80 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G054200.1 |
Entrez Gene | 105777314 |
Publications ? help Back to Top | |||
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