PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G052400.1

Common Name

B456_002G052400, LOC105777152

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BES1

Protein Properties

Length: 326aa MW: 35119 Da PI: 8.3612

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G052400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	212.1	1.4e-65	2	145	1	150
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 ++++r ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyr+g+kp e+++++g sa++sp+ Gorai.002G052400.1 2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRNGCKPVERMDIVGGSATVSPC 92 5899************************************************************************************* PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsssl 150 ss++ +s ++sy++sp+sssfpsp+s++ + + + +sl+p+l++ls++sss+ Gorai.002G052400.1 93 SSYH--------PSSRASYNPSPASSSFPSPASSSYMVNPNGdvNSLFPWLKNLSSASSSA 145 ........999************9988776665577********9987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.1E-65	3	139	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG 60 WTVEPDGTTY RNGCKPVERM DIVGGSATVS PCSSYHPSSR ASYNPSPASS SFPSPASSSY 120 MVNPNGDVNS LFPWLKNLSS ASSSASSSKR PYSYIHGGSI SAPVTPPLSS PTARTPRMKN 180 DWEDQSVLPG WSAQQHSFLP SSTPPSPGRQ IVPDPEWFSG LQTPHSRPTS PTFSLVSSNP 240 FGFKEEVLAG GGSRMWTPGQ SGTCSPAIAA GLDQTADVPM SEVISDEFAF GSNATGLVKP 300 WEGERIHEEC GSDDLELTLG SSKTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-22	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-22	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-22	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-22	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243116	0.0	AC243116.1 Gossypium raimondii clone GR__Ba0066P11-hvl, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455701.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4-like isoform X1
Refseq	XP_012455718.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4-like isoform X2
Swissprot	Q9ZV88	1e-140	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A0D2NIJ8	0.0	A0A0D2NIJ8_GOSRA; Uncharacterized protein
STRING	Gorai.002G052400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-126	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Gorai.002G052400.1
Entrez Gene	105777152

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]