PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G029200.3 | ||||||||
Common Name | B456_002G029200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 661aa MW: 72515.6 Da PI: 6.424 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.4 | 7.9e-29 | 216 | 269 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Gorai.002G029200.3 216 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 269 79*******************.********************************8 PP | |||||||
2 | Response_reg | 74.5 | 4.1e-25 | 38 | 146 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl+vdD+p+ + +l+++l++ y +v+ + +e al +l+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + + Gorai.002G029200.3 38 VLVVDDDPTCLIILEKMLRNCSY-DVTKCNRAETALLKLRENRngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKDVVMKG 126 89*********************.***************99999***********************6654.8****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +e+l + Gorai.002G029200.3 127 VTHGACDYLIKPVRIEALKN 146 ****************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.2E-173 | 11 | 660 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.57E-35 | 35 | 160 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.2E-41 | 35 | 176 | No hit | No description |
SMART | SM00448 | 2.7E-29 | 36 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.097 | 37 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.0E-22 | 38 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.51E-26 | 39 | 151 | No hit | No description |
PROSITE profile | PS51294 | 11.048 | 213 | 272 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.58E-20 | 213 | 273 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-30 | 215 | 274 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-25 | 216 | 269 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.4E-8 | 218 | 268 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MKNSSGGKGS MSTASSITTW KAGDVVPVPD QFPAGLRVLV VDDDPTCLII LEKMLRNCSY 60 DVTKCNRAET ALLKLRENRN GFDIVISDVH MPDMDGFKLL EHIGLEMDLP VIMMSADDGK 120 DVVMKGVTHG ACDYLIKPVR IEALKNIWQH VVRKRKNEWK DLEQSGSVEE GDRQPKQSED 180 ADYSSSVNEG NWKSSKKRKD DEDETEDRDD TSTLKKPRVV WSVELHQQFV AAVNQLGIDK 240 AVPKKILELM NVPGLTRENV ASHLQKYRLY LRRLSGVSPH SCNPNNSFMN PQDETFGPLS 300 SVHGLDLQTL TATGQLPAQC LATLQAAVLG RSTAKSSIPM PLVNQRNIFS FENPKLRFGE 360 GQQQHVNNNN KQVNLLHGIP TTMESKQLTS LRRTSQSIGN VSMQVAPHGA QSSQNNSSLI 420 EMGQPLSRVQ ILNDSTVPLS VGQPIVPNGI AANVSTRNGI PENIRAPGYN LVSQTSSILN 480 FPMNHASELP VDSFSLRSTP GMSDHTSKGA FHEDFNSEIK GSGGFLPTYD VFNDYQYKSQ 540 NWELQNAGMI LEDSQHSNSL QGNLDLAQSV LVQQGFPSGQ INGQNRSVPI VSKAMFSAGD 600 STEPGNLLNV NHHLNTIRAE NTVRVKSGSV ADGNPSNLFA DHFGQEDLMI ALLKQDLMNG 660 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-22 | 215 | 275 | 4 | 64 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX587930 | 2e-76 | JX587930.1 Gossypium hirsutum clone NBRI_GE22201 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012453255.1 | 0.0 | PREDICTED: two-component response regulator ARR2 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A0D2PZZ2 | 0.0 | A0A0D2PZZ2_GOSRA; Two-component response regulator | ||||
STRING | Gorai.002G029200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.1 | 0.0 | response regulator 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G029200.3 |