PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G027000.1
Common NameB456_002G027000, LOC105775003
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 471aa    MW: 49766.5 Da    PI: 6.6262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G027000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.6e-124368227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        +++ C +++rtG+C yG++C+F+H++
  Gorai.002G027000.1 43 DEADCIYYLRTGFCGYGSKCRFNHPR 68
                        6799********************96 PP
2zf-CCCH38.52e-1290114327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C++++rtG Ck+G++Ck++H++
  Gorai.002G027000.1  90 QPVCQYYMRTGACKFGASCKYHHPK 114
                         689********************96 PP
3zf-CCCH33.47.4e-11135159226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C+++ +tG+Ck+G +CkF+H+
  Gorai.002G027000.1 135 GEKECSYYVKTGQCKFGTTCKFHHP 159
                         7899********************8 PP
4zf-CCCH39.21.2e-12293319127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+++++tG CkyG++C+++H+p
  Gorai.002G027000.1 293 PGQPECQYYMKTGRCKYGSSCRYHHPP 319
                         5789*********************97 PP
5zf-CCCH29.51.3e-09341365327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++C ++ + G Ck+G+ C+F H++
  Gorai.002G027000.1 341 APPCTHYTQRGMCKFGAACRFDHPM 365
                         689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.4E-54168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3244169IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-94368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-64470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-54768IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6187115IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-787114IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-1090114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-690114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-592113IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521133161IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4139158IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131292320IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6296320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5298319IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727338366IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-6341365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5342368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4343363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MERDPESDPQ PEWNTQGPET GLEEPVCRLG LEGGSESYPE RPDEADCIYY LRTGFCGYGS  60
KCRFNHPRDR AGVMGVGRGG VGEYPERAGQ PVCQYYMRTG ACKFGASCKY HHPKQGGGSV  120
SSVPLNYYGY PLRPGEKECS YYVKTGQCKF GTTCKFHHPA PPAMQVPAPS PAPQVAPAPT  180
PMPAPTMYST VQSPSGPSSQ QYGVVMARPP LMPGSYVQGP YGPLLLSQGV PSWNPYPGPV  240
GYGTQPTVPS SSTFGATPLS PSATAYTGSH QFVPSSFEPS SNIQEEVSFP ERPGQPECQY  300
YMKTGRCKYG SSCRYHHPPE VFAPKADVVL SPLGLPLRPG APPCTHYTQR GMCKFGAACR  360
FDHPMGTLSY SPSASSLADM PVAPYPVGTT IGTLAPSSSS SELRPELLSG SSKDPAPAMI  420
SSSVSASSEP VGSVFSEGAP VPHSTTQQSS WSSAPSTGGG SDDDEPHSSS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453008.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-151C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A0D2PZV80.0A0A0D2PZV8_GOSRA; Uncharacterized protein
STRINGGorai.002G027000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-121C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]