PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G021600.1
Common NameB456_002G021600, LOC105774348
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 364aa    MW: 39636.1 Da    PI: 5.3752
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G021600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.68.4e-2950144186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                         rWt+qe+l+Li+++r  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++es+s +++ 
  Gorai.002G021600.1  50 RWTRQEILVLIQGKRVAENRVRRGRaaglafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWENNTREESESFWVMR 140
                         8**********************97778888888*********************************************999999999999 PP

            trihelix  83 dqle 86 
                         ++l+
  Gorai.002G021600.1 141 NDLR 144
                         9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.450116IPR017877Myb-like domain
PfamPF138371.3E-1250140No hitNo description
Gene3DG3DSA:1.10.10.609.0E-550115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MASEQLSMAA TPDPIDGRKD AVNAAINGVE SRPLSVDCGD DVSKAPRLPR WTRQEILVLI  60
QGKRVAENRV RRGRAAGLAF GSGQVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDFK  120
KIKEWENNTR EESESFWVMR NDLRRERKLP GFFDKEVYDI LDGAAAVSSA VEIPDSVVAP  180
ALALALTPTP AVQDTAEDNE AVFDSGRSAA AEDGLFSDFE QDDGAGSPEK VELPVSADAG  240
KSVPAPIPIS EQQHQQQPAI PGSKSQGATK EKHPTSNPEV GSASQEARKR KRTETNGDEE  300
PDNSPQYHLI DVLEKNGKML VAQLEAQNTN FQQERQQRKD HADSLVAVLN KLADALGRIA  360
DKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452275.10.0PREDICTED: uncharacterized protein LOC105774348
SwissprotQ8VZ201e-118ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A0D2M5T70.0A0A0D2M5T7_GOSRA; Uncharacterized protein
STRINGGorai.002G021600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-117Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]