PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G020100.1

Common Name

B456_002G020100, LOC105774205

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 341aa MW: 38348 Da PI: 7.4986

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G020100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.1	4.5e-11	112	135	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +C++f+r+G C++Gd C FaHg Gorai.002G020100.1 112 STICSDFRRGGGCPRGDDCEFAHG 135 569********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.75E-7	108	139	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-6	109	136	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.314	109	137	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-8	110	137	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-9	112	135	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	142	173	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6	145	168	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.052	145	169	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010187	Biological Process	negative regulation of seed germination
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MTTVYDPSHH LTSKKLCFKD LEIPPRKKQL HCCHNAAAME LPHHEARLHK YLPSNEDDDG 60 TDDPYGTDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDPTRYQY SSTICSDFRR 120 GGGCPRGDDC EFAHGVFECW LHPTRYRTEA CKDGKNCKRK VCFFAHSSRE LRLLPESQPP 180 YKNSEKNYNH CCLFCRSVTS SSSLSPTSTL LGLSHFSRSP SLSPPLSPLG HQQRTPRYGG 240 DRISKFGTGM TTSYDDVLLK EVMMSCLGTM NLSEVSSPMA TTANTNIPWL DVSFKGAPSM 300 ESPSGSGEYF NGGGDDEKNN GNGVVLDHDL DLGWVNELLM *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY887895	0.0	AY887895.1 Gossypium hirsutum putative CCCH-type zinc finger transcription factor (ZFP1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452063.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBL	A0A0D2PZF1	0.0	A0A0D2PZF1_GOSRA; Uncharacterized protein
STRING	Gorai.002G020100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2987	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	2e-57	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G020100.1
Entrez Gene	105774205

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]