PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G007600.4
Common NameB456_002G007600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 436aa    MW: 49620.4 Da    PI: 9.2282
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G007600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3612e-1989178299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +k ++ps+v+   +l lpk+f+ +h  +k e+++++lede+g++++vk+ ++k +    l++GW++F  a++L egD++vF+l++ s+f  
  Gorai.002G007600.4  89 IKYMLPSHVTGGFWLGLPKHFCLNHL-PK-EDRMMVLEDEEGKEFQVKYLVEKIG----LSGGWRGFSIAHKLLEGDVCVFHLVRPSKF-- 171
                         57899*****************9884.33.5679***************555555....************************998999.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v ++rk
  Gorai.002G007600.4 172 KVYIVRK 178
                         8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2281180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2583182IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-2686177No hitNo description
SMARTSM010191.3E-2188179IPR003340B3 DNA binding domain
PROSITE profilePS5086313.21188179IPR003340B3 DNA binding domain
PfamPF023621.7E-1789178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAVSPKQRIS SLKVSRGRGR PPKTKLFRKK VPAMTVNQIV SYEKEKAQCN KRKRATYDEV  60
YENGQTKLAV MERALDIQAN LSSEFPSMIK YMLPSHVTGG FWLGLPKHFC LNHLPKEDRM  120
MVLEDEEGKE FQVKYLVEKI GLSGGWRGFS IAHKLLEGDV CVFHLVRPSK FKVYIVRKKC  180
SDEVDVALGL LKLESSTQLV DNGKELKICE ISVGKTEDRN APILYSSNIE RTVDQSKNNR  240
VDLGSEVSDG VRLSDSIVNF REVKSFEDFN ILVNGLVIDS EFSKYLQMKY YELCCNQNSF  300
LHENLLEGLN CKLVAGVIAE TINIADAIRA AKLTTPHDSF LTWDKTLRSF EGLGMKVGFL  360
RARLDKLMNL LTKSRRYKEV KLEQANSNEE KLKLEAKLAE VTHTLTKLDR EIRLFKQEKA  420
DDLEALFREV ANGPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450378.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A0D2NGB60.0A0A0D2NGB6_GOSRA; Uncharacterized protein
STRINGGorai.002G007600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-42B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]